barSeed - Barley Seed Development Database

Probe CUST_15233_PI390587928

Source Contig U35_4362

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15233_PI390587928	Hv_44K_v2	TCTGCTTGGCTGGAAATTTGTCAATTATGAGATGGCAAGGCTTACTTTTCAAACAAAAAA	2566	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.476	1.599	1.206	0.930	0.310	0.430
Raw	383.997	662.256	422.455	510.607	60.744	90.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81590.1	1133	3e-22	840 - 895	100	56 / 56	plus	ABC10199
JLOC1	JLOC1_54267.1	1061	1e-22	816 - 871	100	56 / 56	plus
Harvest21	ABC10199	2637	3e-25	2567 - 2626	100	60 / 60	plus	ABC10199
Harvest35	U35_4362	2637	3e-25	2567 - 2626	100	60 / 60	plus

Contig Sequence (2637 bp)

>U35_4362 2637 Hv_44K_v2
CTAAAGGATGCCAATGCAACTATTAACTCACTGCAAGATGCATTATCCACACGCTAGTAA
CAGGTGCTGCTAGTCTTATTGCTGAAAAGAATGAAGCTGGAGCCAAACATGAAATGGAAA
CTAGTGCTCTTAATGCTAAACTAACCAAATGTGTGGGAAGAGTTAGGATAAAAGTCATGT
TAACTTACACAGGCGTTCAACCGAACATTATGGTTACCTTGAGAAACTTAGCTCACTTGG
AATGGATGATAGTATGGTATCATTGATGGCTGAAGAATTTGGAAAAAAGGTCAGCAGCTT
GAGAGATATGAGCCTTATAGTGAAGGGTATGCATGAACACCTCGCTGCAATGGGGTTCCA
GATTGATGCAATTATGGAGGATTCAGAGTTTGGCAAGCTTTTCTCTCTTTCGGACTACAA
TAGCTTTGTTACCGAAAGAATGCTTGACAGAAGAAGTAGAAAAGAGAATATTGATGGTGA
TTCATCCTTGAATACTATTGTTGAACAATGCAGCAAGCAAGCTGGATATCTCTCTGGATT
TTTTGAAGATCTATCAGGTTACATGAGTGACAATATTATATTGCTGCTCCGTGCTTTGCA
ATTAGCAAGCAGCAACTTTTCTCGTACTTTAGAACAGCATGACTCCTTGAAGATTGAACT
GGAGAACAAGGACGCTCAGAACAGAGCTCAAGAAGATGAATTGCTTTCGCTGCAAAAAGA
GCTCAGTGCAATGTCATCAAAATGTATTTATTGCACTGAACAGATGCAAATTATTTTTGA
TGGCGTGCTTGATTTAGGTTACGCAATAGACTTGGCAACAGGCAGCTCCAGCGTTCCATC
AAAAGTAGGACAAACTTTGTCTGTTTTGAAGGACGAGGAGCCTGGTGATTGTATAAAGGT
GGTGGACACTTTAGTATCTTCCGTGAACAAACTGAAGTCGGAGTCTCATAGGTTATCTGA
TATTAAGGGGTTAGTGATAACTTTGTTAGATGAGTTGAAAATGAGACTGAAACAAGCCGA
GTCAGCTGCTGAAACTGCTTCAAATGACCACCAGCTCTATGTGGAAAGAGTATGCAAACT
GGAGGAAGATCTCAGAACTTTATATGATGAGCGCAATGGAATGGAAATAAGGATTCAGGA
ATACCAGGAAAGAGAGGATGTGTTGAAGGCAAGAGAGTTAGAGTTGCTGTCACTTGAACA
CTCTCAAACTACAGTAGACAGAGGTATAACTGATGCAATTTCAAAGGATCAACTGGAAGC
ACTTGTTGAAAAAGTAAATAAACTAAGTATACCATCAGGCGAGCCGCATTTGCAGAGTGA
AGTGGCTATGTTCTCTAGTCCCATGGGCAAACTCTTCTTTGTTATTGATGAATTTGATGC
ATTCCAACGCGAGGCAGAGAACTTAAGATATGAAAATGAAGATTTACAGTTAACTCTTGA
ATCTCATGCTCGTGAAATTGAACAGCTCAAGGAGGTTTGCAGAAACACTGATTCAAATCG
TAGGGAGTTGGAATCAAAAAGCAGTGAACTGCTTGAGGTTACAGTCAGTATGGAGCGAAT
GATTCAGCGGTTTGGATATCTTGCTGGAAAAGATGCGCTGGAAGATAACAAACCTGCAAG
CACACAAACACTCTTACCAAAGCTGGAAAAACTAATAATCGCTTCAACTATGGAATCTGG
GAATGCCAAGTCTGTAAAACAGGAACTGGGATCGAAGTTGCAGGCGAGGGAAAAGACAGT
TGATGAGTTATCAGCAAAAGTTAAGATGCTTGAGGACTTGTATCATTCTCAGCTTGTGCA
GCCAGAGGTTAGTAAAGACAGAGCATTTGACGCATCTTCCTCAGCAATTGGTTCAGACAT
ATCCGAGATTGAAGATTTGGGGCCAATGGGGAAGACATCGCTTTCATCTGTCCCTACTGC
TGCACATGCTAGAGTAATGCGGAAGGGGTCATCCGACCATCTTGTTCTTAATATCGGCTC
AGAGTCTGAACGACTAATTGCTGCCCATGATTCGGATGACAAAGGGCGTATTAAGTCATT
GCATACATCTGGCTTGATTCCGGCACAAGGAAAGCACATTGCTGACAGAGTTGATGGCAT
CTGGGTCTCAGGGAGCCAAATTCTGATGAACCGGCCGCGAGCAAGGCTAGGAGTCTTGGC
GTATTGGCTCTTCCTGCACCTATGGTTGGTAGGCAGCATCTTGTGACACTGCTTGTCAAT
AACCAACCCCCTCATAGCATAACTGTACAATAGCGCGGATCCATAGTTTTACCTTTTCTC
TCTTCTTCGCTTTTATATACTATAGAAATGTCATTCTTTTCATCTCCTGCTCCCTATTCA
AATTTGTACTTGTGCTGAATTCCGCGAGCAGGATGTAATATGTGCAGAAGATCAAAATAC
CATTCTTTGTTACGCTGGAGAAGTGAATGTTTGGACGAGAGTTTTCTGTGTGTTTCCTTT
GGGAAGCAAGATGTCCAACTGGCTATACTGTCAAGTTTTACCGATCAAAAGGAAAGGCTT
ACAAGACTCGAGCTTATTTCTTGTTATCGTTGTTCAGTGAGGGTGTTCTGCTTGGCTGGA
AATTTGTCAATTATGAGATGGCAAGGCTTACTTTTCAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_4362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38480.1	1766	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g47860.1	1774	0.0
Arabidopsis v10	AT1G24460.1	1807	1e-69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa - 70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other Eukaryotes - 33775 (source: NCBI BLink). \| chr1:8666072-8672338 FORWARD LENGTH=1807