- Probe CUST_1522_PI390587928
- Source Contig U35_30250
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1522_PI390587928 | Hv_44K_v2 | TCCCTCACTCATTTATATCCTAATATTCGGTATTATCATGTCACCGTAGTAGCTGCATCA | 446 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.165 | 2.197 | 1.352 | 0.742 | 0.400 | 0.353 |
| Raw | 155.010 | 166.196 | 93.805 | 79.793 | 14.783 | 14.316 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50786.1 | 2765 | 3e-22 | 1 - 56 | 100 | 56 / 56 | minus | ABC09046 |
| JLOC1 | JLOC1_32393.1 | 2824 | 8e-25 | 2710 - 2769 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30065 | 538 | 3e-25 | 447 - 506 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30250 | 538 | 3e-25 | 447 - 506 | 100 | 60 / 60 | plus |
Contig Sequence (538 bp)
>U35_30250 538 Hv_44K_v2 CTGTGTACCAGTCCGGTTTCTCTCATAGGCTAAGTCACACTGGATTGGTAGAAACTACTA CAAAAGAGGTCCCGACGGCAATGACATCCACCAGACAAATGTTCCCCACATTAGGATCGA ATTCCGACACAACATTTGGAAAGAGGAGATGGAGCTGATACATTTCGGAAACGTTAACCT ACCGGAAGAAACCGACAGGTGAAGATGTTGCAGCAGTTCTCAAAGCCCCGCGCACCCATG GCAGATATATCAGCATGGAAGGATAAGGAGAAGACACTCTAGGATTCCAGTGGAGGCACA CGCACACACTCATCAGGCTCGCTCCCTGGGTACATTAGTTAGTGACCTTCCTTGGAATAA AATCCTTGCATCTTTTGCTTTTATTACCCAGATAGTACTACGTAGATTTTACAGCATGTT AAATCTGGTAATTTATTCGCGTCGCCTCCCTCACTCATTTATATCCTAATATTCGGTATT ATCATGTCACCGTAGTAGCTGCATCATTTTTTTTTCCTACTAGAACACAGCATATGTC
Homology of Contig U35_30250 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |