barSeed - Barley Seed Development Database

Probe CUST_15222_PI390587928

Source Contig U35_4373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15222_PI390587928	Hv_44K_v2	GCACACGACTGTCGAACGGAACTGGGAACATGAATGCGGAGAATTCTAATTTGTTTTGAG	565	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.974	1.545	1.044	0.803	0.397	0.468
Raw	8705.737	10243.267	6410.063	7585.550	1348.792	1709.640

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63540.2	3191	2e-24	2 - 61	100	60 / 60	minus	ABC18411 ABC40085
MLOC	MLOC_63540.1	3169	2e-24	42 - 101	100	60 / 60	minus	ABC18411 ABC40085
MLOC	MLOC_63540.3	4481	2e-23	4424 - 4481	100	58 / 58	plus	ABC18411 ABC40085
JLOC1	JLOC1_41629.1	3141	8e-25	3063 - 3122	100	60 / 60	plus
Harvest21	ABC18411	642	1e-23	566 - 625	98	59 / 60	plus	ABC18411
Harvest35	U35_4373	651	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_4373 651 Hv_44K_v2
GCATCGTAATATTACGTGAAGGGCATGAGGATCTAGAGTCCATAGGCATGGATCCCTCTG
CAATTGCCATTGTTTGTTGGAAAGGAAAGACCAATCTGTGCGTCATGGTCACTCCCATGG
ATGGGAGGGAGCTGCTTGAAAGGATCTCATTTCGTTTCGGGCTCAAAATCCCAAAAATCG
ACGATGGGAAGCCCGACCTGAAGAGTGATGATGGATCAGACGAGCAGCCTGATGGTGGCG
CCGAGACGGTTGATCCAGAATGCGTGCCTGAGAGCAAAGCACCAGAAGACATGGATATCA
CAGACGTCAAGGACGCTGAGTAGCTCGGTTTGACACCATGCGAGGAAGCATGTCATGTCT
GGTTATGATGATGCATCAGAGCCCCGCTACCTGGCTTACGAGTTGATGGTTGCTATAGTG
GGAGAGTTGTTGCCATTCCTTGGTTCTTCCTGTAGTAATTCTATCCTATTCCTTTGCCAT
GAAAACCACACCGCATACATGGTGCCAGACTGCTAGCTGCTGCTCCCGTGTAACGTACTA
TCAGTTTGTTTTTGGTGTGATGTTGGCACACGACTGTCGAACGGAACTGGGAACATGAAT
GCGGAGAATTCTAATTTGTTTTGAGATATTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None