barSeed - Barley Seed Development Database

Probe CUST_15220_PI390587928

Source Contig U35_4375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15220_PI390587928	Hv_44K_v2	GTCGTCAATGTAATACTTTGTCAGTGTGACCGCCTTTAGAAATGGTAATAAGCATATCAA	559	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.239	0.199	0.455	2.615	2.700	3.835
Raw	2.949	3.454	13.234	101.080	46.317	69.191

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60661.1	642	2e-24	577 - 636	100	60 / 60	plus	ABC09754
Harvest21	ABC09754	645	3e-25	560 - 619	100	60 / 60	plus	ABC09754
Harvest35	U35_4375	645	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_4375 645 Hv_44K_v2
TCGTCGCAGATCGACACAGCACAGCTACCACACACCAGGGTCCAAGAGATATATATCTCC
ACTCTCGCACTATATTGGTTCTTGGTTAGCAAAACGTATATACTCATAGCAATGGCGAAG
CGTCTGGCCGTCGCGCTCCTGCTGCTGCTGGTGGCGCTCCTCGCGTCCTGCGACGGGAGG
GAGCTCAAAGGGAAGGGCGCCGTCGACGAGGCCAAGGATCTGCTGCCCGTGCTGCCGCCT
CTGGTGCCCAACCTGCCGCCGCTGCCGCCCGTGGTCCCCGGAATCCCTCCGGCTGCCCGC
GGCTCCACCGCCGGCGACAACGAGTCTCCATGATCATCGTTTGTGCCGATCGATCGAGTT
CACGTGCCTCCATCTGCTTGTGGTTTTAGACTTTTAGCAAAGCTAGCACCGGCAGGACGC
ATGCAGAACAACGGCGTCTCGCTCATGTCCGTGTGCCTTGATCTGTACGTACTAGTAGTA
CCAAGTAGCAACCATATGCATGTATGTGCCCGTCGTGTTTAATTCCTTTCGGTTCGAGTT
CAAATTTTGTTCCTACTTCGTCGTCAATGTAATACTTTGTCAGTGTGACCGCCTTTAGAA
ATGGTAATAAGCATATCAATTATCCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None