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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15217_PI390587928Hv_44K_v2GTGACTCGTGATACTTATGTCATGCTGTTGTTGCAATGAAATTACTACCTACACAAAAAA805GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4981.4401.1870.8880.4210.510
Raw 4645.7007079.0005003.7675903.020980.0891308.439



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3765438973e-22840 - 89510056 / 56plus ABC40296
MLOCMLOC_34369.39173e-22816 - 87110056 / 56plus ABC40296
MLOCMLOC_34369.111513e-22855 - 91010056 / 56plus ABC40296
JLOC1JLOC1_22153.111841e-22857 - 91210056 / 56plus
Harvest35U35_43788763e-25806 - 86510060 / 60plus



Contig Sequence (876 bp)

>U35_4378 876 Hv_44K_v2
CAAGCAAGCAAAACAAAGCAGCCCCCTTTTCTTTGTCCGTCTCTCTGCGGCGGCGGCGGC
GGCGGCGGCCGGCGGCGAGGCGATGAGAGCTGTCACCGGCGCCATCGTCTCCTCGAAGCC
GTGCTCGCTGCTCAAGGCCAAGGGCATCCTCTCCGGATTCTTCAAGAGCTCCGCCTCCAA
CCTCCCCACCTCCGACGCCGCCACCTACCTCCTCACCGCCGCCGACGCCGTCGACGAGCT
CTGCCAAATCCGCGGCGACATCCGCAGGGCCCTCCACCACCACCTGCACCTGCACCACCA
GCAGGAGGGCAGCCCCCCTGCTGCTACCGGTGACGGTGACGGTGAGAGGAGGAACAAGGA
CAAGGGTCGTGTGAAGCAGGAGGAGCAAGAGGCGGTGGTGTCCAAACAAGGGATCAGTTT
GGTTCCCAGGAAGAAGAAGGACATTCCATGTGTCATCAAGCAGGAAGAACAAGAGGAGCC
GGAGCACAAGATGATTTCAAACAAGGGATCAGTTGGTAGCCACGACAAGAAGCGGAAGCA
CGCCGCCCAAGACTTGGTCGAGGTGAAGAAAGAAGAAGCTGATTTCGTCGATGCCGATTT
GGGGAGCGACAAGAAGAAGAAGAAGAAGAAGCCCAAGAAAAACAAGAGGAGCAGAGACGG
CGACGACGCCCAACAAGAAGAAGAAGCGGAGGTCGAGCATACCAAGAAGAAGCAGCGCAA
CTAGTAAGTAATCTGGGAGGTTACTGCTCGGCTGTTCTAGCTATCGTATCCATCCTAGTC
TAGGCTCACTCAACAGCTATGTTTTGTGACTCGTGATACTTATGTCATGCTGTTGTTGCA
ATGAAATTACTACCTACACAAAAAAAAAAAAAAAAA



Homology of Contig U35_4378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None