barSeed - Barley Seed Development Database

Probe CUST_15213_PI390587928

Source Contig U35_3480

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15213_PI390587928	Hv_44K_v2	GTAAATGCGTGTCCTGGTGCTGAATCAAATTTTTTGACGGTATTTATGAGTTTGCTTGCC	2802	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.782	1.423	2.074	1.536	0.425	0.387
Raw	595.938	1660.145	2124.307	2417.068	248.611	239.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63726.5	3317	2e-24	3171 - 3230	100	60 / 60	plus	ABC21274
MLOC	MLOC_63726.3	3442	2e-24	3361 - 3420	100	60 / 60	plus	ABC21274
MLOC	MLOC_63726.2	3580	2e-24	3499 - 3558	100	60 / 60	plus	ABC21274
MLOC	MLOC_63726.1	3550	2e-24	3425 - 3484	100	60 / 60	plus	ABC21274
JLOC1	JLOC1_41776.2	3528	8e-25	3269 - 3328	100	60 / 60	plus
JLOC1	JLOC1_41776.1	3685	8e-25	3426 - 3485	100	60 / 60	plus
Harvest21	ABC21274	1158	3e-25	21 - 80	100	60 / 60	minus	ABC21274
Harvest35	U35_3480	2894	3e-25	2803 - 2862	100	60 / 60	plus

Contig Sequence (2894 bp)

>U35_3480 2894 Hv_44K_v2
GGAAATAGACTGACTGGGAAAATTCCAGAAGTGATTGGCCTCATGCAAGCTCTTGCTGTT
CTTGATCTGAGCGAAAATGAACTAGTAGGGTCCATTCCTCCGATACTCGGCAACTTATCC
TACACTGGCAAACTATATCTACACGGCAATAAACTTACTGGAGAAGTACCACCGGAGCTT
GGAAACATGACTAAACTTAGCTACCTGCAACTGAATGACAATGAATTAGTGGGCACAATT
CCAGCCGAGCTTGGGAAACTTGAAGAGCTATTTGAATTAAATCTTGCCAACAACAAGCTT
GAGGGTCCTATTCCTACAAACATCAGTTCTTGCACTGCTCTAAACAAATTCAATGTTTAC
GGCAATAGATTGAACGGTTCTATCCCTGCTGGTTTCCAGAATTTGGAGAGTTTGACTAAC
TTGAACTTATCCTCAAACAATTTTAAAGGCCATATCCCATCTGAACTTGGTCACATCATT
AATTTGGACACACTGGATCTTTCCTACAATGAATTCTCTGGGCCAGTTCCGGCTACTATT
GGTGATCTTGAGCATCTTCTTCAATTAAATTTGAGCAAAAACCATCTTAGTGGATCTGTG
CCTGCTGAGTTCGGAAACTTGAGAAGCATCCAAGTAATTGATTTATCCAACAACGCCATG
TCTGGTTATCTCCCTGAAGAACTAGGCCAACTTCAGAACCTTGATAGTTTGATTCTTAAC
AACAATACTTTGGTTGGGGAGATCCCTGCTCAGTTGGCTAACTGCTTCAGCTTAAACATC
TTGAACTTGTCATATAACAACTTTTCTGGACATGTCCCATTGGCTAAGAATTTCTCAAAG
TTCCCCATCGAAAGCTTTTTGGGAAACCCGATGCTGCGCGTTCACTGCAAAGACTCCAGC
TGTGGTAACTCACATGGATCAAAAGTGAATATTCGGACAGCGATTGCTTGCATCATCTCG
GCCTTCATCATATTGCTCTGTGTTCTGCTATTGGCAATATATAAAACAAAGCGACCACAG
CCACCTATCAAAGCATCTGATAAACCAGTGCAAGGACCTCCAAAGATAGTACTCCTCCAA
ATGGACATGGCTATCCATACCTATGATGATATAATGAGGCTAACAGAGAACCTAAGTGAG
AAATACATCATCGGCTATGGCGCTTCAAGTACTGTGTATAAGTGTGTGCTCAAGAGTGGC
AAGGCCATTGCTGTGAAGCGACTCTACAGTCAATACAACCATGGTGCCCGGGAGTTTGAG
ACGGAACTGGAGACAGTTGGTAGCATCCGGCACAGGAATCTTGTCAGCCTTCATGGTTTC
TCACTCTCTCCAAATGGAAACCTGCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGG
GATCTTCTCCATGGTCCATCAAAGAAGGTGAAACTTGACTGGGACACCCGACTGAGGATC
GCCGTCGGTGCGGCGCAAGGGCTGGCCTATCTTCACCATGACTGCAACCCTCGGATAGTC
CACAGGGACGTCAAGTCCTCCAACATCCTCCTCGACGAGCACTTTGAAGCGCATCTCTCT
GATTTCGGCATCGCCAAATGCGTCCCAGCTGCCAAGACACACGCGTCCACCTATGTGCTA
GGAACCATCGGCTACATCGATCCGGAGTACGCCCGGACGTCGAGGCTGAACGAGAAGTCC
GATGTGTACAGCTTCGGTATCGTCCTCCTGGAGTTGCTCACCGGGATGAAGGCTGTCGAC
AACGATTCCAACTTGCATCAGTTGGTAAGTCTCAGATCATATTGGTGCTGTCTTTTCATT
GCATTGTGCAATTCACGCATCTGAATGAAATGCAACCATCGTTTTATCAATCACATTATG
GTCTTCAGGGCATGGTATGATCTGAGCACCCTGTGTGTGTGCGTTTGTGCGTAGATAATG
TCGAGGGCGGACGACAACACGGTGATGGAGGCGGTGGACTCGGAGGTGTCGGTGACGTGC
ACGGACATGGGGCTGGTCCGGAAGGCGTTCCAGCTGGCCCTGCTGTGCACCAAGCGGCAC
CCCATCGACCGTCCGACGATGCACGAGGTGGCCCGGGTGCTGCTCTCGCTGATGCCGCCG
CCACCCGCCGCCGTGAAGCCCTCCTCCTACGGCAAGACGACGACGGACGCCTCCAAGAAG
GTGGACTACACGCGATACCTGGCGGCGGCGGCGACCCCCGACACGGACCACGGCGACAAC
AGCTCCTCCGACGAGCAGTGGTTCGTGCGATTCGGCGAGGTCATCTCCAAGCACACCATG
TGACCGTGACCATGACCGTGGCACGACGCCCCCCAAAAACTTCTCCTCCCCAAGCTGTAG
CATAGCGAGAGCTGGAAGTAAGAAGCAGCATCAGCTAGGAAAAGCATAGCAGAGCACAGT
GCAGGGAAAAATAGTTGTGGTAGGGTTTCTTTCCGAGTAGATGGACGGACGGCGCCATTG
TTCTTCTTCTTCTTATTCTTCACCCCTTCCCATTTTGTTCTTCCTGATGTTGGTTATCAG
AGGCGCCATTAGAAGTTCAGAACATAACCAAGGCGTAGGATGTCAGCTGGGAGAGGAGAC
TTCTGGCCTCTGGGGCATTCATGGCGTGGATCAGATGAGATTCAGAATCATCAGAGACGT
CTCGTGAGCGCCTTGAAAGCCCCATGCTCTGGCTGGATGATGATGACGACCGGAGAGATA
CTGCTGCTGCTGCTGCGACGATGATGGGGCTTGTTGGATCCTGTTAGCGCATTGAATCGA
ATTGAGCCTGCTGGGCAGCAAAGGATTGTGCGATGGATGTGTGTAAATGCGTGTCCTGGT
GCTGAATCAAATTTTTTGACGGTATTTATGAGTTTGCTTGCCTGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

Homology of Contig U35_3480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g03970.1	1000	protein\|receptor-like protein kinase 5 precursor, putative, expressed
Brachypodium v1_2	Bradi1g49950.1	983
Arabidopsis v10	AT5G62230.1	966	\| Symbols: ERL1 \| ERECTA-like 1 \| chr5:24996433-25002130 FORWARD LENGTH=966