barSeed - Barley Seed Development Database

Probe CUST_15201_PI390587928

Source Contig U35_3492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15201_PI390587928	Hv_44K_v2	CAGACAATTGTCAAAGTAGCATTACATTGGTGTTCAGTTGTCAAAATACCATTGCAAACA	1294	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.035	1.416	0.583	0.496	1.090	0.971
Raw	19.514	13.063	4.189	4.645	3.624	3.820

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_30395.2	1633	4e-23	1429 - 1488	98	59 / 60	plus
JLOC1	JLOC1_30395.1	1213	4e-23	1009 - 1068	98	59 / 60	plus
Harvest21	ABC09197	1323	3e-25	1256 - 1315	100	60 / 60	plus	ABC09197
Harvest35	U35_3492	1359	3e-25	1295 - 1354	100	60 / 60	plus

Contig Sequence (1359 bp)

>U35_3492 1359 Hv_44K_v2
ACTGTTGGCCTACTGAGCTCCCCCCACCCCCCGCGCGCGCGCAGTTCGTTCCGCCTCCCA
CGTCGCACGCTACGGCCACCTACCACCCGCGACGACCGGACCGGGGGTAGCAGCAGCGCG
CGACCAGCCGGGGATAGCAGCCAGCACCCAGCAGCAATGGAGGCGGCCGCGGGAGTGGCG
ATGCAGTCGCGGGCGGTCGGGGTCGCCGGAACCGGCTCCTGCGGGCGCCGGAGCGGGGAT
GGCCGGGCGCGCCCGGGGAGCCTGCGAGTCGGAGGCCCGGCCGCCGCGCCGGTGCTGCGG
GCTCGCGGGGCCAGGCCTGCCGACCCGCTCTGCTGCCTCAAGACATCCAGAGGTCATCAG
AGCTTGCATAACTCAGTTGACGAAGCCCTCTTGCTAAAGAGGAAAGCAGAGGAAGTTCAG
CTCGAATTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGCTCTGGAAAGAGCACC
GTGGGCAAGATATTAGCGGAAGTCTTGGGTTATTCATACTTTGACAGTGATAGTTTGGTC
GAACAGGCAGTCGGAATGCCTTCCGTTGCTCAAATATTTAAGGTTCATAGTGAAGCATTC
TTCAGAGACAGTGAGAGTAGTGTTTTGAGAGATTTATCCTCAATGCATCGACTAGTTGTT
GCTACTGGAGGTGGTGCTGTCATTCGACCAGTCAACTGGAGATATATGAAGAAAGGTCTG
TCTATCATGTTGGATGTGCCTTTGGATGCACTTGCGAAGCGAATTGCACAAGTCGGGACT
GCTTCTCGGCCCCTTCTAGATCAGCCATCTGCTGATCCATACACAGCGGCTTTCACGAAA
CTCAGCCTGCTCGCTGAGCAAAGAGGGGATGCTTACGCAAATGCCGATGTAAGGGTCTCT
CTTGAAGAGCTTGCAGCCAAAAAGGGTCATGATGATGTCTCTCAGCTAACCCCGACTGAT
ATTGCTGTCGAGGCCCTGCAAAAAATTAAGAATTTTGTCACTGAGCATTCCATGGCCAGT
GGCCCATTCGCCGACTTATAAATTGGTTCCGGGGACAAAGGATGCAACCTCAGGCTGAAT
GCAACCCTTGTAGAATTTCGGCCCCAATTTGTTTGTACCTTGTATCTTTACTTTGTATCG
CTCAACCTTATTGATTCATTCTTTATACTGAAAAAGGAGCTGTGCTGAAGCATGCTCTGG
AAATAATAAAAGAATAGCGGATGGAGCTAATGTTAAGAGCTCCACTGTTACGAGATCATT
GCACTTACATTTTTCACTCAGCTGTTCTTTCAAACAGACAATTGTCAAAGTAGCATTACA
TTGGTGTTCAGTTGTCAAAATACCATTGCAAACAAAGTA

Homology of Contig U35_3492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12150.1	308	2e-148	protein\|shikimate kinase, putative, expressed
Brachypodium v1_2	Bradi1g45304.1	303	7e-164
Arabidopsis v10	AT2G21940.4	304	6e-81	\| Symbols: SK1, ATSK1 \| shikimate kinase 1 \| chr2:9351106-9352881 FORWARD LENGTH=304