barSeed - Barley Seed Development Database

Probe CUST_15198_PI390587928

Source Contig U35_3495

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15198_PI390587928	Hv_44K_v2	GTAACGTTTATGAATAATTCGCCGACTCACACGGACAGCTTTATGGTGCGTAACAAAAAA	1722	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.205	2.420	1.174	0.828	0.277	0.340
Raw	6789.580	11355.577	4855.697	5558.147	625.201	840.233

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53568.1	1898	9e-22	21 - 75	100	55 / 55	minus	ABC09135
JLOC1	JLOC1_34435.1	1694	5e-22	1535 - 1589	100	55 / 55	plus
Harvest21	ABC09135	1793	3e-25	1723 - 1782	100	60 / 60	plus	ABC09135
Harvest35	U35_3495	1793	3e-25	1723 - 1782	100	60 / 60	plus

Contig Sequence (1793 bp)

>U35_3495 1793 Hv_44K_v2
AGGAATTCGGACGAGGCCCGCGATCCGCTACCAGTCCCGGCCGTCTCCGACCTGGCGCTC
CTTCTCCGTCTTCTTCCCTCACCGCTCGAGTTTGGAATCCGCAGAGGAGAGGAGGAAGAT
GGCGGCGGAGAGGGTCAGGGACGTGGGCATCCTCGCCATGGACATCTACTTCCCGCCCAA
CTGCGTCCACCAGGAAGAGTTGGAAACTCATGATGGTGTGAGCAAAGGGAAGTACACCAT
TGGGCTTGGGCAGGATAGCATGGCATTTTGCACTGAAGTGGAGGATGTCATTTCAATGAG
CTTGACAGTGGTGAAGTCCCTCCTGAAAAATTATAACATCGATCCAAAGTGCATTGGACG
TTTGGAAGTTGGCAGTGAAACTGTAATAGACAAGAGCAAGTCTATAAAGACATGGTTGAT
GCAAATATTTGAGGAATGTGGTAATACTGATATTGAAGGAGTTGATTCCTCAAATGCATG
CTATGGTGGAACAGCTGCTTTGTTTAATTGTGTTAATTGGGTCGAGAGCAACTCTTGGGA
TGGACGTTATGGACTTGTTGTTTGCACAGACAGTGCGGTTTATGCCGAAGGACCGGCTCG
TCCTACTGGCGGTGCAGCTGCTATCGCAATGCTGATTGGACCAAATGCTCCTATTTCATT
TGAAAGCAAGTTTAGAGGGTCTCATATGGCGCATGTTTATGACTTCTACAAGCCTGATCT
TGCGAGCGAATATCCGGTGGTCGATGGTAAGCTATCACAGACATGCTATCTCATGGCACT
GGATTCCTGCTACAAGACCTTTTGCAAAAGGTACGAAAAGATTGAAGGGAAGCCATTTTC
AATCGTCGATGCAGATTCTTTTGTATTTCATTCTCCATACAACAAGCTTGTACAGAAAAG
TTTTGCTCGTTTATACTATAATGACTTCTTGAGAAACTGCAGCATTGTCGACAAAGACTC
GAGAGAAAAATTGGAGCCCTACTCGGGCTTGTCATCCGAAGAAAGCTATCAGAGTCGGGA
CCTTGAGAAGGTATGTCAGCAAGTTGCGAAGCCCCTGTATGATACCAAGGTTCAGCCAAC
AACATTGATCCCAAAGCAACTCGGGAACATGTATACGGCGTCACTCTATGCTGCTTTTGC
ATCAGTTGTCCACAATAAACATGATGCTCTGGTGGGCCAGAGAATCGTCATGTTTTCTTA
CGGCAGTGGCATGACATCGACAATGTTCTCCTTAAAAATCAATGAAGTCGAGCATCCGTT
CAGCCTATCGAATATTGCAAGCATACTGGATATCTCCAACAAATTGGAGTCTAGGCATGT
GGTTCCACCGAAGAAATTTGTCGAGGCTCTGAAGCTGATGGAGCACCGCTACGGCGCCAA
GGACTTCATCACCAGCCAGGACACGCGCTTGCTCGTTCCGGGTACCTACTACCTCACCCA
TGTCGACTCCATGTACCGCCGGTTCTATGCCGTGAAAGGCGATGCGGCCGCCACTCCTAT
AACCAATGGACATTGATTGATTGACTCTGGCCAGCCTGAAGCTGCAATAAGCGCCGCAAG
CGCTCTTAGATTATTTATCTGGTAGGGAAGGGAAAGGGAAGGGTGGAGCTTGCCCAGATT
AAGTTTGTAAAGTTAGATAGAGCTGCCATTGTCGTAATGCCTTGTCAGTGAGAATTCTTG
GCTCTGTAGTGGAACATTCGTGCTCTGCTGGGTTGTAAACTTGTAACGTTTATGAATAAT
TCGCCGACTCACACGGACAGCTTTATGGTGCGTAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g02710.1	464	protein\|hydroxymethylglutaryl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi1g77290.1	464
Arabidopsis v10	AT4G11820.2	461	\| Symbols: MVA1, FKP1 \| hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase \| chr4:7109124-7111901 REVERSE LENGTH=461