barSeed - Barley Seed Development Database

Probe CUST_15192_PI390587928

Source Contig U35_20501

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15192_PI390587928	Hv_44K_v2	TTTAGAATTCAGAGTGTTCTCTAGCTGTACATGCTACCTCGTGTCTTTCTCTGTACACGC	684	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.305	1.260	1.114	0.950	0.447	0.495
Raw	915.877	1407.693	1089.563	1434.826	243.449	290.222

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11219.1	2020	8e-25	1817 - 1876	100	60 / 60	plus
Harvest21	ABC19021	698	1e-23	30 - 90	98	60 / 61	minus	ABC19021
Harvest35	U35_20501	786	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (786 bp)

>U35_20501 786 Hv_44K_v2
GCAGTGACAATGCTATCAACCCTTCTGGGATCACCTTAAAAGAAAAGGCTAATGAGCCAC
CAATCGATGAAAATAAGAAGGATCATGCTGCCGAGACAGCTTCCACCTCACCTAAAAGAA
GGAAGGTCTTGAAGACACGTATAGATGAGCGGGGGAGAGAAGTAACTGAGGTTGTCTGGG
AGGGCGAAGCTCCTGCAAGTGATAAGGCAGAGAAAAATGTTACCACTACTGATGCCAGTA
ACAGGCCAACTCTTCCAAGCAAGCCACAGCCAGCAGTTAACACTGACAGGAGCAATGCTC
CAAGTAAAACAGCAGGCAGCAAGAAACCTGCCAAGGCTGCTGCCCCCAAGCAAGGAAAGA
ACATAATGTCATTCTTCAAGAAGGTATAATAAGCCCGTCTCCTTCCATCTGATAACGAAG
CCATTGATGGATCAAACGGTCTCTTTCCAAGCACCCACCCGTTGCAGCCGAACTGGCTCT
GCCTGAATATCACCTCGGACAAGGACTTGCTCACCAAGCAGCTCGTGCGTCGTAGCTTTT
CTTTTAAGTAACCTGTAGCATTTTGTGTTGTACTAGTAGTTGGTGTTGGTTTCTTCTTCC
CGATTCAGGATCCAAGATGGGCTGAACCATGCTTGCTGCGTGGCTGGCATGAATCCTGCT
GGGCTTACTGAATGTGCATCCTGTTTTAGAATTCAGAGTGTTCTCTAGCTGTACATGCTA
CCTCGTGTCTTTCTCTGTACACGCACGTTGCTGTCCTGAGGTTGGAGGCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_20501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None