barSeed - Barley Seed Development Database

Probe CUST_15191_PI390587928

Source Contig U35_20502

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15191_PI390587928	Hv_44K_v2	TCCATTATCTTGGTGCTTGCTCTTGTGATGAAATATTTGCCCCCAGAATGGTAGGTTAAT	1093	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.377	2.165	1.117	0.748	0.320	0.241
Raw	479.398	682.718	305.790	325.262	49.049	39.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_20502	1156	3e-25	1094 - 1153	100	60 / 60	plus

Contig Sequence (1156 bp)

>U35_20502 1156 Hv_44K_v2
AAAAACCCTCTCCTTTCCTTTCCTTTCATTTCTTTCTTTCTTGCACCCCACGCCCACCGC
CGCCGCCGCCGCCGCCGCCGTCGCCATGGCCGATCCGCGGCTGCACCCGTCGGGGTCCCG
CGACGAATCCGACGGCCGTCGCCTCTACGACCCGTACCAGGACCTCAACATCCCCACCGC
CTACAAGAACCTCTACGACCTGCCCACCTCCCCCGAGTTCCTCTTCCAGGAGGAGGCCCT
CGTCCACCGCCGCTCCTGGGGCGAGAACCTCACCTACTACACCGGCGTAGGATACCTCTC
CGGTGCCGTCGCGGGGGCCGCGCTCGGCCTGCGCGAGGCCGCACAAGCCGCAGAGCGCGC
CGACACGGCCAAGATCCGAGCCAACCGCCTCCTCAACTCCTGCGGCTCCGCCGGACGCCG
CGTCGGCAACAGGCTCGGCGTCATCGGACTCCTCTACGCCGGCATGGAGAGCGGAATGGT
CACCGCCCGCGACGGCCACGACGACTGGATCAACAGCGTCGTCGCGGGACTCGCCACCGG
CGCCCTCTTCAGGGCCGCACAGGGGCCACGCTCCGCAGCCGTCGCCGGAGCCCTAGGTGG
GGTCCTCGCAGCCGCCGCCATGGCCGCCAAGCAGGCTGCCAAGAGATACGCGCCCGCCGC
ATTCTGATTCTGATTCATGCTCCCTCCCTCATGGTATCACATCACATCACATTACAGTAC
ATTACTCGCTGCCGCCGCCGCCGCGATCAATCGAATCAGAATCCGATGGTCGGAACAATT
GTTTGACAAGGGATGTACTAGTTTCTTCTTCGTTCATACTGTATTATTATTTGATGAGAA
GGGTCATCTTCTCGACAATTATGGTATTATTAAGTGTTATGCTATATGCAATCGATGCCA
TCGGTATCGGATCAGCAGACGAATTTTTGACATGCCTTGTTGCAATGTAACATCTTCTTC
ATCACTACAACTTAGTTAGCGACTTTGTTGGTGGGTGCCAGACTTAATAATACAACTGCC
AGCGTTTACATTATGCTGGAGAGTCCAGGACATTGTGGAATGTAATGTTTACTATTTTGT
AGAGTAATTTCGCTCCATTATCTTGGTGCTTGCTCTTGTGATGAAATATTTGCCCCCAGA
ATGGTAGGTTAATTGG

Homology of Contig U35_20502 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02390.1	195	3e-69	protein\|mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Brachypodium v1_2	Bradi3g31150.1	195	4e-71
Arabidopsis v10	None