barSeed - Barley Seed Development Database

Probe CUST_15186_PI390587928

Source Contig U35_20507

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15186_PI390587928	Hv_44K_v2	TCGAATCCCTTTTTGGTGCCTACTGTACGTGCTTTGAGCTAGTATGATGTATGCTCTTGC	1138	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.363	1.423	1.045	1.005	0.529	0.460
Raw	2776.030	4555.033	2941.270	4518.817	821.054	770.719

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13237	1214	3e-25	1139 - 1198	100	60 / 60	plus	ABC13237
Harvest35	U35_20507	1214	3e-25	1139 - 1198	100	60 / 60	plus

Contig Sequence (1214 bp)

>U35_20507 1214 Hv_44K_v2
CGGCGGCGGCGGGTCGAAGCTCGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCGGCC
GGTGGAGGCGGCCAGGGGCGCCGCCGCGCGGTACCGGGAGGCTGTCGGGCTGCAGGTGGA
GGCCTTCTGGCGGCGCAACTACCTGCTGCTCGTCGGCGCCGGCGGCGTCATCATCTGCAT
CGCGCTCTGGCGGGTCATGTTCGGCATCGCCAGCACCTTCGTCGGCCTCTCCGAGGGCAT
GGCCAAGTACGGCTTCCTCGCCCTCGCCACCGCCATGGTCGCCTTCGCTGGTATGTATGC
ACGTGCAAGGTTCACCATAAATCCTGACAAGGTTTACAGGACTGCAATGACAAAACTCAA
TACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCTGGCACTGACGTCAGAGC
ATATGTTATGTCTGGTGGAGGCCCTAAACTAAAGGACTTCAAATTCAGGGTTGGTGGCAA
ACGGTGTTTTCTTATCTTCCCCATCAAAGGATCAGAAAGGAAGGGTCTTGTAAGTGTTGA
AGTCAAGAAGAAAAAGGGACAGTATGACATGAAGCTACTCGCTGTTGACATACCAATGGC
GACAGGTCCTGATCAGCGGTTATTCCTTGTCGGCGACGAGCAGGAGTACAAGGTGGGTGG
GGGCTTGATATCCGAGCTGCGGGACCCTATAGTGAAGGCCATGGCTGCAGAAAAGGAGTT
TGATTATCTTGATGAGAGAGAGGACGCAGAGGATGAGCGCAGGGAGCGAGAGGAGGCCGA
GGAAGAGGCGGCCGAAGCATTGAGGCGAGAGGAGGAGAGGTTGCGCGAGGAGGCTAAAGA
GAGACAGCGGCGAGAGGCTGAGAATCTGGAGAAAGCCAGCTGACCGGATTGACTGCATCC
CTTTTTTTCTCCTTGGTGTTGTGCATTTTCCCACTCTACCCCCCCCCCCCCCCCTACAAT
GCACAGCGATCAGCATTTTCGCGGCGACGGAAAGATTGCATCTGAGTTTCAGATAGGCGG
TTTCGCCTTTCACAGCGTGTCGATAGGGTAATAATTTTTGGCTGCTCCTCAAAATGGTTT
TTACTCGGGAGCGCATTGTGTAATTTAGTGGCTGCATGAATGAATGATGGCTATAGCCTC
GAATCCCTTTTTGGTGCCTACTGTACGTGCTTTGAGCTAGTATGATGTATGCTCTTGCCA
CANAAAAAAAAAAA

Homology of Contig U35_20507 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07382.1	381	1e-145	protein\|expressed protein
Brachypodium v1_2	Bradi2g04190.1	380	8e-146
Arabidopsis v10	AT3G56430.1	434	2e-110	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40800.1); Has 3121 Blast hits to 1477 proteins in 196 species: Archae - 12; Bacteria - 170; Metazoa - 996; Fungi - 324; Plants - 132; Viruses - 59; Other Eukaryotes - 1428 (source: NCBI BLink). \| chr3:20923653-20925696 REVERSE LENGTH=434