barSeed - Barley Seed Development Database

Probe CUST_15184_PI390587928

Source Contig U35_20509

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15184_PI390587928	Hv_44K_v2	GCTAGCCGTGTTGGTTGTTTACGTATGTATAATTTCACTTGATGAATGAAGATAATGAAC	475	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.255	2.384	1.158	0.830	0.227	0.195
Raw	273.652	488.255	192.933	217.955	20.855	19.114

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361977	3058	2e-24	2994 - 3053	100	60 / 60	plus	ABC15338
MLOC	MLOC_52246.1	1040	2e-24	497 - 556	100	60 / 60	plus	ABC15338
MLOC	MLOC_52246.2	1032	2e-24	495 - 554	100	60 / 60	plus	ABC15338
JLOC1	JLOC1_33458.1	796	8e-25	494 - 553	100	60 / 60	plus
Harvest21	ABC15338	534	3e-25	453 - 512	100	60 / 60	plus	ABC15338
Harvest35	U35_20509	557	3e-25	476 - 535	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_20509 557 Hv_44K_v2
TTTTTTTTACTTTTTCAACCTTCACCTCTCTTCAATTTGATGGTGCCAGCTGATTCAAAC
CACAAGAGGAGAAGGACAAAAAATACTACCACTACTAGCAACCCCAAGGCTTTTTAAAAA
CAGAGTGTCAGATACGTTAGGCCCCCCCTCCTATTATCTCCACCATATGCATTAGTTACT
GTTAGTTGATTATTATTACTACTACTAGTACTACCAACCAATACTATTACCACCAACCCG
CCATTGATGTGCCACCAAAGCTCCTGGCAAGCCAAGCCAAGCCACCGCCACCATAATCCA
ACTAGCCCTCATGTTAGTAGTAGTGGTTCGTAGCACATTAGGTGTGATGTTTAGCCAAAA
GTACAAAGGAATACTACCACAATGTATGAGATTATTATTACACTAGTGCTCTGCTCGCTG
TATTGCAAGACAGTGCAACAGGATACCACAAGTGACAGGCAGGGAGGCATAGCTAGCTAG
CCGTGTTGGTTGTTTACGTATGTATAATTTCACTTGATGAATGAAGATAATGAACAGGTC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_20509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None