barSeed - Barley Seed Development Database

Probe CUST_15182_PI390587928

Source Contig U35_20511

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15182_PI390587928	Hv_44K_v2	TTTTCCATGTACGTGTGTCGGTGTGTGACTGGTAGAGTTTTCTACCAAAGCAAGTGAACG	1127	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.706	1.115	5.916	3.263	0.779	1.094
Raw	5.244	14.838	72.746	62.318	3.725	7.280

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40617.1	2098	8e-25	1802 - 1861	100	60 / 60	plus
Harvest21	ABC12521	1243	3e-25	57 - 116	100	60 / 60	minus	ABC12521
Harvest35	U35_20511	1243	3e-25	1128 - 1187	100	60 / 60	plus

Contig Sequence (1243 bp)

>U35_20511 1243 Hv_44K_v2
GGCCCGTGAACGTGAGCGAGCGGATCGCCGTGCTCATCACCGATTCGGCGGTGCGCGCCA
TGATCGGGGACAGGTTCAAGAGGCGGGAGGAGTTCTTGGAGACGCTCGACGAAGGGGTCA
AGCTCGTCGCCGGGTTCAACCTCGGCGACCTCTTCCCGTCGTCCCGGCTCGCCAGCTTCA
TCAGCGGCACGGCGCGGCTGGCCGAGGAGAACCACCGCAAGAGCTTCGAGCTCATGGAGT
ACGCGATCCAGCAGCACGAGCAGCAGAGAGCCGCCGCCTCGGCGAACGGCGACGTGGAGG
AAGGAGGAGAGGACCTAGTGGACACGCTCTTGAGGATACGCAAGGAAGGTGGCCTCGACG
TGCCTCTTACCATGGGCATGATCAAAGCAGTTATACTTGATCTATTTGGTGCCGGGAGTG
AGACGTCGGCTACCACACTTCAATGGGCCATGTCGGAGCTCATGAGATACCCAAACGTGA
TGCTGAAAGCACAAGCTGAAGTACGCAACAATCTCCAAGGAAAGTCTAAGGTGACCGAGG
ATGACTTGGCCAATCTCAAGTACCTCAGACTCGTCATCAAGGAGACAATGAGGTTGCATC
CAGCTGCGCCATTGCTTCTCCCTAGAGAGGCCATGGAGGCTTGCAAAATCCTCGGGTACG
ACATACCCGAGGGCACAACGGTTTTGGTGAACGCGTGGGCGATCGGTAGGGACCCTATGT
ATTGGCAAGATCCTGAGGAGTTCAAGCCGGAGAGGTTTGAGTCTGGGATGGTCGACTTCA
AAGGCACAAACTTCGAGTACATCCCGTTCGGAGCAGGCAGGAGAATGTGTCCTGGGATGA
CATTTGCGCAGGCCAGCATGGAGATTGTGCTCGCCTCACTCCTCTACCACTTTGACTGGG
AGCTCCCAAGTGGGGTTAAGCCAGATGGGCTAGACATGACCGAGGAGATGGGCCTCACCG
TCCGGCGAAAGAACGACTTGTACCTGCACGCCATGGTCCATGTGCCCTTGATTTGATGTA
CACTTGCATTGTCATGTCATATGGCATATGTGACTGCTAGTTCTAACATAGTAGTGTATT
CTATGGGCCCTCGTCGAATGTGGATGCATATGAAACTATTAGTGATTTTTTCCATGTACG
TGTGTCGGTGTGTGACTGGTAGAGTTTTCTACCAAAGCAAGTGAACGCCCCCGGCCTGTT
CAAGTGACTGAGAGGTACGCTGTTATTAATTTGGATCCTCAAA

Homology of Contig U35_20511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09200.1	520	1e-167	protein\|cytochrome P450 71D10, putative, expressed
Brachypodium v1_2	Bradi3g06240.1	511	6e-171
Arabidopsis v10	AT3G26300.1	500	5e-71	\| Symbols: CYP71B34 \| cytochrome P450, family 71, subfamily B, polypeptide 34 \| chr3:9639199-9640866 REVERSE LENGTH=500