barSeed - Barley Seed Development Database

Probe CUST_15180_PI390587928

Source Contig U35_20513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15180_PI390587928	Hv_44K_v2	TCTATCTGCATGGACGTTTCTGCTCACAACTATTGGTTCATGGCGGATAAACACTGATAG	1017	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.194	1.016	1.110	0.870	0.262	0.308
Raw	149.253	200.288	191.984	252.565	25.849	32.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29945.2	996	2e-24	518 - 577	100	60 / 60	plus	None
MLOC	MLOC_29945.1	1823	2e-24	1361 - 1420	100	60 / 60	plus	None
MLOC	AK250053.1	1914	7e-23	1021 - 1080	98	59 / 60	plus	ABC10309 ABC43121
JLOC1	JLOC1_19865.2	1912	8e-25	1086 - 1145	100	60 / 60	plus
JLOC1	JLOC1_19865.1	1734	8e-25	1250 - 1309	100	60 / 60	plus
Harvest21	ABC15239	1070	3e-25	1008 - 1067	100	60 / 60	plus
Harvest35	U35_20513	1080	3e-25	1018 - 1077	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_20513 1080 Hv_44K_v2
AAGCCGCCTCCCTCCTCCCCGTCCGCCTCCGTCCCTCCACCGCCAAGCCCAAAGAGAGAA
CCGGAGACCACGGCCCGGCCAGCCCCTCCCCATCCCCGACCCCGCGCCCTCGCTACTACA
TGGCAGCTCGGCGTCTCCACGGCCAATCCGACTCCGAAACCCTCAAGAACAACCCCTGCT
TCTGCTTCTGCTTCTCCGGCCCTTGTCCTCAGCCGCGCGCCGCGCATCTCGATTCCGCCC
GCGCCCGCTCCTGATTGGTGCTCCGCGTGCGCCGTGTCCTGACCCCTGACCGACTCCCGC
TGCGCGGCTGCTTGCGCGGCGCCGCTGGTTCCTTCTTGCTGCGATTCTCGTCCGTTTCGT
GATTCCGGTTTCCTGCTGCCCGGCCGGCCTCGCCATGGGGAAGAGTAAGAAGAGCAAGGT
CCGCGGCGCCGGAGGGGACGACCTTCTGGACAGCAGCGACGCCGACAGCGTGGGATCGTC
GTCCACCGCGCTCTCAGATCTCTCCATCTCGTACGCCACCGAGAACGTCAACTCGCACGA
GTTTGTTCTCGACAAGTACATCGACGCTCTCTACGAGAAGAGGGGGTCTACAAGAGAGGC
AGCGTTGGCTTCGTTGGTTGATGCTTTCGAAAGTTTTATGCTTGATGGTCTTGTTGAGAA
CAAATATGCCACTCTACTGAGTCTATTCAATACTTCGATCAAGAAGGGATCTATCAAGGA
GGCTTGCCTGGCATCTCGTGCCATTGGGTTACTGTCTATTACACTTGGTGCTGGGAGTAG
CTCACATGAAACAATGGTAGACTCACATCCACAGCTTTCTAAGGTCCTTCAAACCTGGTC
GGATGCTTCAAAGATGATCTCTGCTCTTGAGTGCTTGGCCATCATCACATTTGTTGGTGC
AACTGATCTGGCTGAAACAGAGTTATCTTTGAAAGCCATGTGGGATGTGATTCATCCAAA
ATCAGGTTCAAATGTTGGTACTGTCCGGAAACCAAAGCCACCTGTGTTAGCAGCTGCTCT
ATCTGCATGGACGTTTCTGCTCACAACTATTGGTTCATGGCGGATAAACACTGATAGTTG

Homology of Contig U35_20513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39900.1	466	4e-107	protein\|interferon-related developmental regulator, putative, expressed
Brachypodium v1_2	Bradi1g23000.1	434	1e-115
Arabidopsis v10	None