barSeed - Barley Seed Development Database

Probe CUST_15166_PI390587928

Source Contig U35_18207

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15166_PI390587928	Hv_44K_v2	CGGGGTTAAACAGTGTTTTTTGTGGTTTACTTTCTGTTCCATTCACTTGAGATTATGAAT	1154	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.440	1.254	1.320	0.987	0.365	0.336
Raw	376.105	504.047	472.584	547.226	72.774	72.031

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7378.2	1458	8e-25	1232 - 1291	100	60 / 60	plus
JLOC1	JLOC1_7378.1	1735	8e-25	1509 - 1568	100	60 / 60	plus
Harvest21	ABC09005	1246	3e-25	1155 - 1214	100	60 / 60	plus	ABC09005
Harvest35	U35_18207	1246	3e-25	1155 - 1214	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_18207 1246 Hv_44K_v2
GGCCGGCCTAACTCTCGCCTTGCCGCTGCGGGACGCTTGCTCCGCCCCGAAGCTTCCCTT
CCCCGATTCTCCGCCGCGGCTGTTTCTGTCGCCGGTCAAGATGATGTCCGGCGGTGGCTA
CTCCGCCCTCGACGACCCCAAAGCCTCCGGATCCGTCCCGGCGGCGACGGGGCCAGATCC
GCAGACCATCAAGTTCACCGAGTCCAACCTCCAGACCTTCCCACCCTCTGAAGCCAAGGG
CAAGATCTCTGGCGCCTACCGCCCGCCCACTGACTCAGACGACACCTTCTCGTCCAAGGT
TGGAGGGGCAGGCGGAGGCAGGGGTAGCGATGGTGGATCGGACGATGCCGCGCAGGGCGG
CTGGTTCCGCATGTTCTCCGTAGCGGCCTACAAGCCCTACTTCGACGTTGACACGTCCGA
TGTCGTGGAGAGGATCTGGGAGTCGGTCTTCCCCTTCCGCGGCAACTTCACAGAGAAGAC
TTCGGACAAACCCGACCTGTATGGGCCATTCTGGACAAGCACCACCCTGATTTTTGTTGC
TGCTTCCATTGCCACGTTTGTCACCTACCTTTCCCACAAATGGCATAAGAAAGAGTGGAC
CTATGATATTAACCTGGTTACATGGTCTGCGGGCTTATTCTATGGCTATGTGACATTTGT
TCCCCTTGGGTTATATGTCATTCTTAAGTACTTCTCAGCACCTGCTGGACTCGTGCAATT
GTGGTGCCTGTATGGGTACTCTTTATTCATCTTCATTCCAGCATCGCTTCTGTCAATTGT
GCCAATAGAAATATTCAGATGGGTTATTGCTGGTGTCGCTGGGTTTATGTCTGCTACCTT
CGTTGCTGTCAATCTCCGTGCCCACATCTTAAACTCCGGGGAGCGGTGGTTTCTGATCGT
TGCAGGGATATTCTTGTTGCAGTTGGGGTTGGCTGTTTTGCTGAAACTTTATTTCTTTAC
GATAACTGTATAGGGAAATGGTGTCTCTTCTTGTATTAGTCAGAAATGAGCATGCAGTTC
TCCATGTCGAGTCGATTCATTGATGTAATTTTCCAGGCATACATCCCACCTTACATGTGA
CACTCAGGAACGAACACATACTACTTCATTAGCCTCTGAAATCACAGAAATGGCAAAATA
TCCTTCGGTTGTTACGGGGTTAAACAGTGTTTTTTGTGGTTTACTTTCTGTTCCATTCAC
TTGAGATTATGAATAAATCATGAATAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_18207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42480.1	293	2e-173	protein\|Yip1 domain containing protein, expressed
Brachypodium v1_2	Bradi2g43200.1	290	3e-178
Arabidopsis v10	AT5G27490.1	282	3e-133	Integral membrane Yip1 family protein \| chr5:9703130-9704653 REVERSE LENGTH=282