barSeed - Barley Seed Development Database

Probe CUST_15162_PI390587928

Source Contig U35_20521

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15162_PI390587928	Hv_44K_v2	GTGCCATCCCTAGATTTTCAAAGTGTATATTGTACTACTGTTGTAAATATGTAGCATCCA	1224	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.340	1.443	1.234	0.903	0.324	0.319
Raw	1224.373	2118.878	1554.850	1807.060	220.756	242.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10535.1	2053	8e-25	1900 - 1959	100	60 / 60	plus
Harvest21	ABC12726	1380	3e-25	97 - 156	100	60 / 60	minus	ABC12726
Harvest35	U35_20521	1380	3e-25	1225 - 1284	100	60 / 60	plus

Contig Sequence (1380 bp)

>U35_20521 1380 Hv_44K_v2
GGAAAGCGCCAGAAGATTACCCAGATGCTAAAAACCAGCCTCATGTCCAGGTTGCTTTAA
GACTGAAGCAAAATGGTTTCTCTGGATGCTCTGCAGGTGATACAGTTCCTTACATTATTT
GCACACAACAGGATTCTGATAATACACATTCTGGGGGAATTGCTCAAAGAGCTAGGCATC
CAGATGAGTTAAAACGAGACCCTAACAAGTGGATGATTGACATCGAGTATTATTTGTCAC
AACAGATTCATCCTGTCGTTTCTCGTCTATGCGCTTCAATTGAAGGTACTAGCCCAGCCC
GACTGGCTGAATGTCTTGGACTTGATTCATCCAAGTTCCAATCAAGATTGACCGGGTCTA
GCAACGAAGATACGTCTAGCATGCTCTTATCTGTAATTGATGATGAAGGCGAGAGATATC
GTGGCTGCGAGCCAATGTGCTTATCATGCCCAAGCTGTACCTCTACCTTCGAGTGCCCCC
CTGTATCAAGTCTGATTGCTAGTTTATCAGATCCAAATGAAGGAAAAGACGCTACTGTGA
ATTTCTGGCATCGGATGCGGTGTCCAAGATGTCCAGATGACACTGATGAGTGCAGAGTTT
CTCCTGCTGTGCTCTCCAACCAGATAAAAAGACAGGCTGATACTTTCATCAATCGGTATT
ATAAAGGTTTGCTGATGTGTGATGACGAGGGTTGCAAATATTCAACTCACATAGTGAACC
TTAGAGTGATGGGGGATTCTGAGAGAGGAACCATCTGCCCGAACTATCCACAATGCAACG
GCCGTCTAGTCAGACAGTACACAGAGGCAGATCTATACAGGCAATTGTCCTACTTTTGTT
ATGTACTTGATGCAGCCCGCTGTCTTGAGAAGTTGGACCAGAAGATTCGGCTTCCCTTTG
AGAAAGAGTTTGCAGTATTAAACCAAACCATAAGCTTGGCATTTCTGGAGATTCAGAAAA
TCCGTGACAGATGTGCTTTTGGATGGGTTCAATTGACAGATCTAGCAGTGTCAATCTGAT
AAGCCACTGTTTGCTGTAATCTCAAGCATTGTTGACCTGAGCAAGAAGCTCCCCATGGAC
CGCGGTACACTGCGTTGTTGAAACTTGATCTGCTGTTGAAGGTGAAAGGAACTGGAAGCC
AAATGATTGACCTTGGCCAGTTGCCCACATCATGTTGCATTTAAATACAAATGTTCTAAC
CAGTTGTTTCAGAGACCCTCCTTTGTGCCATCCCTAGATTTTCAAAGTGTATATTGTACT
ACTGTTGTAAATATGTAGCATCCATAAATCCCATGTTTTGTAGTGACATACTTTGAATAC
TAAATTTATCATCAGTCTAGTTCTTCCTTATTATCTTAAATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64820.1	1535	0.0	protein\|POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed
Brachypodium v1_2	Bradi2g56160.1	1442	3e-150
Arabidopsis v10	AT5G67100.1	1524	4e-120	\| Symbols: ICU2 \| DNA-directed DNA polymerases \| chr5:26776994-26785104 FORWARD LENGTH=1524