barSeed - Barley Seed Development Database

Probe CUST_15144_PI390587928

Source Contig U35_18214

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15144_PI390587928	Hv_44K_v2	TGTACAGTAGACAATCTTTTGACTGTAACTTTATATAGTACGCGAGGAGGGTGCTGAAAA	1824	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.093	1.396	1.395	1.107	0.513	0.561
Raw	465.595	914.034	801.677	977.729	162.576	194.354

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55033.1	3265	7e-23	3184 - 3240	100	57 / 57	plus	ABC09078
JLOC1	JLOC1_35467.1	3411	4e-23	3184 - 3240	100	57 / 57	plus
Harvest35	U35_18214	1884	3e-25	1825 - 1884	100	60 / 60	plus

Contig Sequence (1884 bp)

>U35_18214 1884 Hv_44K_v2
GCAGAAAATGAAAGGCAACGTAAATATTTTGATGATGAAATTGAACGAATAACAGCAGAA
GCGCAATACCGTGTTGCTGAGGCTGAAAAGGAATGCAAAATTTCTTTAGAGAATGAGAAA
ATGAAGTACCATCAAGAATACTTGGACTCTATAAAGATACTAGAAGAGAAGTGGAAAGTA
CACCAACAATCACCCAAGAAACAGATTAAAGAACCCGAGCCTACATCAAATGGTGACGTG
CAGGACTTACTGCAGAATGAGAAAATGTTACGCCAATCTGCTGAAGATGAGTCCAATGAC
CTTAAGAATCAACTATCGCACTGGAAAAAGATGGAGGCCACAGCTACTGCTGAAGTAGTG
AGACTCCGGAGAATGTTGGATACTGAAGCTAGCCAAAAAGACAAACTCGAAGAAGAAATA
GCTGTTTTGAAAAGTCAGTTAATGCAGTTAAGTCTGGATGCTGATGAGACAAGAATGAGC
CTTGACACAGGAGATGGACCAGGAAAAATATTTCCTGGTTTAGATTCTTTGATGTCTCAC
TCTCGGAATTCGCAGCCTAGAGAGCAGAGCAATGGACCTAAGGCGCCAGTCGCTAAACTC
TTTGAGCAAGTTGGGTTACAGAAGATATTGTCATTACTTGAGTCGGAAGAACCTGATGTT
CGTGTTCATGCCGTGAAAGTTGTCGCGAATCTGGCAGCTGAAGAGGCAAATCAAGAAAAG
ATTGTGGAAGCAGGTGGCCTCACTTCCCTCCTAATGCTGCTTAGGAGCTCTGAGGATGAG
ACCATACGCCGAGTAGCAGCAGGAGCAATTGCTAATCTTGCAATGAATGAAACGAACCAA
GATCTTATAATGGCTCAAGGTGGTGTAACCTTGTTGTCAATGACAGCATCTGATGCAGAG
GACCCACAAACTCTAAGAATGGTGGCTGGAGCTATTGCTAACCTGTGTGGCAATGACAAA
CTGCAAACTCGTTTAAGAGGAGAAGGTGGAATTAAAGCATTGCTGGGAATGGTTAAGTGT
GGCCATCCTGATGTCCTCGCTCAAATTGCTCGTGGCATTGCAAACTTTGCAAAATGTGAA
TCTAGAGCAGCTACTCAAGGTAACAAGGTGGGGAGATCATTATTGGTGGATGATGGGGCA
CTTCCTTGGATAGTAAAAAACGCGAATAATGAGGCTGCCCCAATTAGGCGGCACATCGAG
CTTGCACTCTGCCACTTGGCGCAACATGAGGTAAATGCCAAGGATATCGTGAGTGAAGGC
GCGCTCTGGGAACTTGTTCGGATCTCGAGGGATTGTTCTCGGGAAGATATAAGGATGTTG
GCATACCGCACGCTGACATCCAGCCCAACTCTTCAATCGGAGATGAGGAGATTGCGGATA
GAGTGTTGATGAATCAACGTAAAAGGATGCAAGTGTGCCTCATCCTCACACCGTGTGGAC
TTATGTTTCTCGCCCAAATCTCCCAAGTTTAGTAGAGGCGCTGCTGGTGGGCAAGCACTG
GTAATCAGGCGCGTCGGCCCTTGATATGCCCAGCTTCTGCAAGCAAGCAAGCAAGCATAC
ATGGCCAGGCCGGGCAGCGGACCCGTTGAGTTTGGTCTGCGCCATCATTCTCCCCAAGAT
GATTCATTTTGTTTATGGCTGGGATTCGTTTTTCAAATCCTAGCGTGTGAGAGCTTTACT
TACCTGGATGTAACCTGTAGGAGAATCTGTGTTGTAAAATCCACGAGCATGGTCGGGATA
TGTGCAGCTGAGTGGCTTGCAGTGCAGATAGGTTGGCTTGGGTTGGGCCGTGGCATGGAT
CATACTTTGTATACTTGTATTAATTGTACAGTAGACAATCTTTTGACTGTAACTTTATAT
AGTACGCGAGGAGGGTGCTGAAAA

Homology of Contig U35_18214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04560.1	892	protein\|kinesin motor domain containing protein, expressed
Brachypodium v1_2	Bradi1g51507.2	899
Arabidopsis v10	AT1G12430.2	920	\| Symbols: ARK3 \| armadillo repeat kinesin 3 \| chr1:4234122-4238552 REVERSE LENGTH=920