- Probe CUST_1513_PI390587928
- Source Contig U35_30259
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1513_PI390587928 | Hv_44K_v2 | TACTCTATCGACCAGATCAGGGACATCCTGCAGACCATGGCTTGACAGGGTGCTGGAGGA | 358 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.964 | 1.038 | 1.420 | 1.478 | 0.745 | 0.603 |
| Raw | 316.062 | 533.409 | 638.279 | 1033.676 | 184.636 | 162.164 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375512 | 1145 | 9e-22 | 704 - 765 | 97 | 60 / 62 | plus | None |
| MLOC | AK372669 | 1180 | 9e-22 | 629 - 690 | 97 | 60 / 62 | plus | None |
| MLOC | MLOC_77080.1 | 1138 | 9e-22 | 651 - 712 | 97 | 60 / 62 | minus | None |
| JLOC1 | JLOC1_51409.1 | 1095 | 5e-22 | 609 - 670 | 97 | 60 / 62 | minus | |
| Harvest21 | ABC30076 | 460 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30259 | 460 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus |
Contig Sequence (460 bp)
>U35_30259 460 Hv_44K_v2 GCGGGAGGTCTACAAGCGCATCTACGAGGCGGGCAACAAGGGAATGTGGAGCCAGGACAT CCGCTACACGATGAAGTTGGCCGCCCCGACCCTCACCAAGCTCACCCGCGCCCTCGTCCA GCGGGGTATTCTCAAGGAGGTCACGGATGTCCGCCACCGCGGGAAGAAGGTCTTCATGGA CGCCCGCATCGAGCCCTCCCCTGAGATTACCGGCGGAACCTGGTACCACAACGGCCAGCT CGATACCGACGCCGTGGCGGCCGTGCGCCGCAGGTGCCTCGACCAGATTGACAGGCTCGG CGCTGCCACCCCGGACATGGTCCACAAGGGCGTCGAGAGGGAAGACCCCAGGGCAGGGTA CTCTATCGACCAGATCAGGGACATCCTGCAGACCATGGCTTGACAGGGTGCTGGAGGAGT GCAGGAGCACCGGGGAGGGAGAATTCAGCGCGGTCAGAGC
Homology of Contig U35_30259 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g36620.1 | 259 | 4e-84 | |
| Arabidopsis v10 | None |