barSeed - Barley Seed Development Database

Probe CUST_15132_PI390587928

Source Contig U35_20435

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15132_PI390587928	Hv_44K_v2	GTGTCTTGTTCCAAATTTGGTACTGGGTTATGTAAAAGAGAATTTGTATCTTGTTGCAGA	744	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.178	0.234	0.828	2.141	1.485	1.732
Raw	249.937	531.703	1629.888	6369.637	1631.598	2025.313

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58487.2	2369	2e-24	7 - 66	100	60 / 60	minus	ABC12842
MLOC	MLOC_58487.1	2260	2e-24	28 - 87	100	60 / 60	minus	ABC12842
JLOC1	JLOC1_38004.2	2330	8e-25	2205 - 2264	100	60 / 60	plus
JLOC1	JLOC1_38004.1	2182	8e-25	2057 - 2116	100	60 / 60	plus
Harvest21	ABC12842	660	3e-25	547 - 606	100	60 / 60	plus	ABC12842
Harvest35	U35_20435	858	3e-25	745 - 804	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_20435 858 Hv_44K_v2
CTCGTTGCAGGGACACATGCTGACAATATCGGATATCAGGTGCGGTGGGTGGACAATATC
TTGGCATGGAGACAGTGGAAAGATAACTCTTGGTACAAGCATATTGGAGGCCATACGAGA
ATCCGTTGGAGTGGAAACTGAAGTTGTGTGTGAGGAATGCCCAACAGAAGCTATCATTGA
ATCCGGGGAATTTTCTTATGCAATTGTTGCAGTTGGTGAGGATCCTTATGCTGAATGGGT
GGGAGATAGAACTGACCTTAGTATCCCATTTAATGGTTCAGACCTGATTACTCGTGTTGC
TAGTAAAGTCCCTACTCTAGTGATTGTTGTATCTGGAAGGCCTTTGGTTATTGAGCCACA
AGTTCTGGAAAAGATAGATGCTCTAGTTGCTGCCTGGCTACCCGGAAGTGAGGGCATGGG
AATTACCGATTGCCTCTTTGGAGATCATGATTTTGTGGGTACATTACCTGTAACGTGGTT
TAGGTCTGCTGATCAATTGCCTATAAATGTTGGAGATGCTAACTATGATCCCTTATTCCC
TTTTGGATATGGGTTGAAAATGTTCAAAAGTGGTGAAGATTTAGCATAACCTCATCATTG
ATTTGGTTATAAATTTGAATCCTTACAATAATCTTACATATGTTGTAAAAGAGAAATAAT
GCCTTGCTGCAAATTATAGGTCGTGTAAAAGAGTATTTATATCTTGTTGTAGATTATGGT
ACTGAGTTATGTAAAAGAAAATTTGTGTCTTGTTCCAAATTTGGTACTGGGTTATGTAAA
AGAGAATTTGTATCTTGTTGCAGATTACAGTATATAACGTGTACACTCCCTAATTTCTTA
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_20435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37700.1	607	7e-91	protein\|periplasmic beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g23720.1	621	1e-95
Arabidopsis v10	AT3G47000.1	608	4e-61	Glycosyl hydrolase family protein \| chr3:17313811-17316539 REVERSE LENGTH=608