barSeed - Barley Seed Development Database

Probe CUST_15126_PI390587928

Source Contig U35_32411

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15126_PI390587928	Hv_44K_v2	TAAGGCATCTAATAGGCATTTGTGAAGAACAAGACAGGTTGGGGAAACTGCACTAACGAC	412	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372055	3463	9e-22	955 - 1016	97	60 / 62	plus	None
MLOC	MLOC_81064.2	3067	9e-22	2419 - 2480	97	60 / 62	minus	None
MLOC	MLOC_81064.3	1229	9e-22	230 - 291	97	60 / 62	minus	None
MLOC	MLOC_81064.1	3629	9e-22	2503 - 2564	97	60 / 62	minus	None
JLOC1	JLOC1_53940.1	3595	5e-22	1020 - 1081	97	60 / 62	plus
Harvest35	U35_32411	487	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (487 bp)

>U35_32411 487 Hv_44K_v2
TTATACAAGGGTCCACCACAGGACCGGGCAGCACCCACCTCTTACACTTTTGATAAGGTG
TTTGGGCCAGCATGCCAGACAGACTTGGTTTATGAAGATGGAGCTAAGGATGTTGCTATG
TCTGCATTGACAGGCATTAATGCCACGATCTTTGCTTATGGTCAGACAAGTAGTGGGAAA
ACATTCACCATGAGAGGTGTGACAGAGAGCGCTGTCCGTGACATTTACAAACACATCGAA
AACAATCCTGAAAGGGAATTCATTATCAAGATATCTGCTATGGAAATATACAATGAGAAT
GTGAAGGATCTTCTACGACCCGACTCTGGGCCCCTTCGCTTGTTAGATGATCCTGAGAAA
GGAACCATCGTGGAGAAGTTGGATGAAGAAATTGCCAAGGATAGCCAACATCTAAGGCAT
CTAATAGGCATTTGTGAAGAACAAGACAGGTTGGGGAAACTGCACTAACGACGCAGTCCA
CGTTCCA

Homology of Contig U35_32411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g33040.1	955	2e-85	protein\|kinesin motor domain containing protein, expressed
Brachypodium v1_2	Bradi1g04397.1	952	1e-87
Arabidopsis v10	AT3G43210.1	938	7e-64	\| Symbols: TES, ATNACK2, NACK2 \| ATP binding microtubule motor family protein \| chr3:15191429-15196021 FORWARD LENGTH=938