barSeed - Barley Seed Development Database

Probe CUST_15123_PI390587928

Source Contig U35_18122

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15123_PI390587928	Hv_44K_v2	GAATGCTAACTTTGTCACATGCAAGTCGGAGTCAATTCCACAGCAATTGGTGTGAAAAAA	1625	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.467	1.530	1.102	0.931	0.411	0.508
Raw	3115.713	5174.480	3241.137	4335.790	665.348	889.132

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40403.1	1746	1e-22	1667 - 1722	100	56 / 56	plus
Harvest21	ABC08021	1716	3e-25	1626 - 1685	100	60 / 60	plus	ABC08021
Harvest35	U35_18122	1713	3e-25	1626 - 1685	100	60 / 60	plus

Contig Sequence (1713 bp)

>U35_18122 1713 Hv_44K_v2
GGAGAGCCATAAACCCTAGCAATTTCCCCACTCCCGAGCCCCATCCCCCGCCTCCCGCGC
CCCGCCCTCGATTCGAACCCCGACAGCGAATCCACGCTCGCCGCTGCTTGCCACCATGGA
GGACGCCGCGGTCGAGGAGGCGGAGGTGAGCGGCGCGGGCGAGTTCGCGCCGGCGCTCGT
CGCCGCCCACCCGCTCGGCCACTCCGTCGCCGTCGCCGTCGGGCCCGAGCTCCGCGTGTT
CGATCTCAAGGGTGGCTGCGCAGTTTCGTTGTCAGATGATTCTGGCGGTTGTTCTCATTC
GGATGCTATTAGAGCAGTTTCGTTCAGTGCTGATGGTGCCTTGTTCGCATCTGCTGGCGA
TGATAAGCTTGTGAAGATCTGGAAGACTGACTCATGGCGCTGCATCCAGACCATAACTTC
TGAAAAGAGGGTTAGCGCAGTTGCTATTAGCAACGATGGCCTGTATGTGACATTTGCAGA
TAAATTTGGTGTCATTTGGTTAGTTACTATGGGGGAACATGGCGAAGGGCAGGTGTCATC
TGATAACAAACCTGTCTCAATTTATGGTCACTACTGCAGTATTATTACTAGCATGAAATT
TTCACCAGATGGACGGTTCATTGCAACTGCTGATCGGGACTTCAAAATTCGAGTTACATC
ATTCCCAAAGAATCCCATAAAAGGGGCTCCCCAAATACAGAGCTTTTGCCTTGGACATAC
AGAATTCGTTTCTTCCATTGCCTTCACAAGTCTTTCTGGAGGATCAAACTTTCTATTATC
GGGAGGCGGTGATTCAACTGTTCGGTTATGGGATTACATAAATGGCTGCCTCCTTGATAC
ATATGAAGTGAAAGACAAGGTGGGTGAACAGCCAAATGAAACTGAAGACAGCAATCTAGC
CATTGCAGACTTGTGTGTGACAAATGATGACTCGCTGGTTGCTGTAGCTATTCAAAGTTT
GAATGGCATAATGCTCTTAGCATGTGATCTTGTAGCAAAGAAGTTGTCTTTTCTGAAGGT
GATCACAACAGAAAAGAGCTACATCCCCACTAGCCTAGCCTACAGTTCATCCGCGGATCT
CCTGTGGACCGTCATGGGTGCGTCAAACATGCCGAACCAGGCCGCGTCCCAGCTACTAAC
CCGCGTCAGAATCATCCCGGGGTTCCAGAAGAATCTATCAGCCTCGGCTGACAATGACCC
CGCAGTCCTGGAAGACAGCGAAGTACCACATAGCGAGAAACTTCTGTTGGCGCTGCAGGG
AAGCCTCGATGCCTCGAAGCAGGAGGAGGTGCTGGCCGCGGTGCTCGCCGCCCTAAGAGT
GTCGATGCACAAGATGCTGGTGAAGAAGAACTACTCGGAGGAGAGGCGGGAGCAGCGGAA
GAGGGGCCGCAACGATAAGAAGATCAAGAAGTAAGCTCTGCTTGACCTGCAAACACCGCC
GGATCACAGACAGGTCGTCATCGCTGCGTTGTACCATTAGAAGCTGAGAAGCACAAGAAA
GAAATGTAGTGACGAAATTGTAAGAGCAGGCTCAGCAACCATTTTTCCTTGTCAATGCCG
CAAAATGTTTTTTTTTCCTTTGTAATTTGCAGCCCATAACAGTTGTTGTTTTGAGCTGTG
AATCGGAATGCTAACTTTGTCACATGCAAGTCGGAGTCAATTCCACAGCAATTGGTGTGA
AAAAAAAAAAAAGAGGGAACTATTTNGAGGGGG

Homology of Contig U35_18122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53530.1	436	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g08810.1	435	0.0
Arabidopsis v10	AT1G03110.1	427	8e-120	\| Symbols: TRM82, AtTRM82 \| Transducin/WD40 repeat-like superfamily protein \| chr1:749359-751796 FORWARD LENGTH=427