barSeed - Barley Seed Development Database

Probe CUST_15121_PI390587928

Source Contig U35_18124

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15121_PI390587928	Hv_44K_v2	ACCTGTGCTGGCTTGTATCATGTGTTATTACCAGCAAATCTACCGTCACCAGTTAAAAAA	1765	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.924	2.075	1.262	0.903	0.472	0.437
Raw	140.107	233.748	128.250	136.218	25.889	26.898

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_21395.2	1606	3e-24	1450 - 1508	100	59 / 59	plus
JLOC1	JLOC1_21395.1	2067	3e-24	1911 - 1969	100	59 / 59	plus
Harvest21	ABC09527	1836	3e-25	1766 - 1825	100	60 / 60	plus	ABC09527
Harvest35	U35_18124	1836	3e-25	1766 - 1825	100	60 / 60	plus

Contig Sequence (1836 bp)

>U35_18124 1836 Hv_44K_v2
CACGGGCCTCCACCCTCTACGGCGCCCGCGCCGCCATCTGCGAGATGCCCTTCTCCCCAT
CTCCGCGGACGACCTCGGGGGCCTCGGGGGAACATGTGTGCTTCGCGGGTGTGTTCCAAA
GAAACTGTTGGTGTATGCATCTAAGTTCTCTCATGAGTTTGAAGAGTCTCATGGCTTTGG
GTGGACATACGATACTGATCCAAAGCATGACTGGAGCACTCTGATAGCCAACAAAAATAC
AGAGCTGCAACGCCTCGTCGGCATTTACAAAAATATTTTGAAGAACGCAGGAGTTGATCT
AATTGAAGGCCGTGGAAAGGTGGTCGATGCACATACTGTTAGTGTGGATGGCAAGCTGTA
CACTGCCAAGAACATACTTATAGCTGTTGGTGGTCGACCATCGATGCCAGATCTCCCAGG
AATAGAGCATGTTATAGATTCTGATGCTGCACTAGATCTGCCGTCAAAACCTGAGAAAAT
TGCAATAGTGGGAGGTGGATATATTGCCTTGGAGTTTGCTGGCATTTTCAATGGCTTAAA
AAGTGACGTTCATGTGTTTATTCGGCAACCGAAAGTTTTAAGAGGGTTTGATGAAGAGGT
CAGAGATTTCATTGCTGAACAGATGTCTTTGAGGGGTGTCACATTTCATACTGAACATAG
TCCTCAAGCTATAACCAAATCAAATGATGGTTTACTATCTCTGAAGACAAACAAAGAAAC
TATTGGTGGGTTTTCACATGTAATGTTTGCAACAGGTCGTAAACCGAATACGAAGAACCT
TGGACTAGAGGAGGTTGGTGTCAAAATGGACAAAAAGGGGGCTATAGTGGTCGATGAGTA
TTCTCGAACCTCAGTGGATTCAATTTGGGCCGTTGGAGATGTTACTGATAGGATCAACTT
GACTCCGGTTGCACTGATGGAAGGTGGAGCATTTGCGAAAACTGTATTCGGTGATGAACC
TACCAAACCAGAGTACAGAGCTGTACCAGCTGCTGTTTTCTCCCAACCACCCATTGGGCA
AGTTGGCCTTACCGAGGAGCAGGCTATTGAAGAGTATGGAGATGTTGATGTCTACTTATC
AAACTTCAGACCTCTTAGAGCCACTCTTTCTGGATTACCTGATCGCGTACTAATGAAGCT
CATTGTGTGTGCTACCACGAACAAAGTTGTAGGAGTGCATATGTGTGGTGATGATGCCCC
TGAGATAATCCAGGGAATTGCAATTGGTGTTAAAGCTGGGTTGACAAAGCAAGATTTTGA
TGCCACTGTTGGCGTTCACCCGACATCTGCAGAGGAATTTGTCACTATGAGGAGTCCAAC
TAGAAAAGTACGAAGAAAAACTGCAGCCGAGGCAGAGTCTAAGGATGAGGTCGTCGCTCA
GAAGTAGATAATGCCGTTGACCGCTGTACATAGAAGTCATTCTTGAGGACGAGTCCCTGC
CACCACGCGAAACCTGACTGGAAATACGCAGCTAGACTTGTGCACAGTTGCCCGAGAAAT
CTGCCACAATGATTGTATCATAACGATGAATGTCCACCTCTGCTTTTTTGCCCCTCCCAT
CTGCGCATTTTCTTTGCTGCTTGAGGCTTGAGCACGCTGGTCGTTGAGTTTCTTTTCCCC
ATCTGCTATTCATGTAATAAATGGTGTACAATGTGGCTGTGGGTGGGTAGTATCTCAACC
TGGAAACGCCGCTCCGGAATACTAGAAAACCAGTGAAGAGTACAAGTACTAGTGACGTGG
ACGTGGTTTTCCCCTTGATTCGTTCACCTGTGCTGGCTTGTATCATGTGTTATTACCAGC
AAATCTACCGTCACCAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g06740.1	556	protein\|glutathione reductase, putative, expressed
Brachypodium v1_2	Bradi1g74180.1	552
Arabidopsis v10	AT3G54660.1	565	\| Symbols: GR, EMB2360, ATGR2 \| glutathione reductase \| chr3:20230356-20233100 REVERSE LENGTH=565