barSeed - Barley Seed Development Database

Probe CUST_15115_PI390587928

Source Contig U35_18129

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15115_PI390587928	Hv_44K_v2	TTCTACGAACTTGACAAAGGCCTCAACATGAAGGTTTGCACTGTTATTAGCGTGGCTCAG	1020	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.343	0.476	1.381	2.218	1.054	1.064
Raw	87.562	204.598	491.980	1287.517	206.476	228.962

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50291.1	1820	2e-24	533 - 592	100	60 / 60	minus	ABC09920
MLOC	MLOC_50291.2	2326	2e-24	421 - 480	100	60 / 60	minus	ABC09920
JLOC1	JLOC1_32103.3	1878	8e-25	1230 - 1289	100	60 / 60	plus
JLOC1	JLOC1_32103.2	1430	8e-25	782 - 841	100	60 / 60	plus
JLOC1	JLOC1_32103.1	1900	8e-25	1252 - 1311	100	60 / 60	plus
Harvest21	ABC09920	1489	3e-25	963 - 1022	100	60 / 60	plus	ABC09920
Harvest35	U35_18129	1585	3e-25	1021 - 1080	100	60 / 60	plus

Contig Sequence (1585 bp)

>U35_18129 1585 Hv_44K_v2
GAAAACCTGTTGCACTCGCTCGCTCGCCTCTTCCGTCTAATCGTCCTCCGTGTCGATTCG
CTCCCCCCCACACACGCGGAGCACAGCGCCTCGCGAGTCAATCAACCAACCAACCAATCA
CCCCCCCCATCCCCTCCCCCGCTCCGCCTCCCGTGGATTCATGGATCTCCGCCCCGCCCC
GCTCTCCCTATCCCTGTAGCTGCTTCCTCCTGCTGCTTGCTGCTCCGCCCGCCTGATTCG
GAGCCGCGCCGAGGGGAGGCGGGGATGGGGTTCCGCAGGAGGGGAGGGCCTCCGCTGCTT
CTGCTGCTGCTGATGCTTCTGCTTCTCGGACTCGTGGCCACGGCCTTGGCTGCGGCGGAC
GACGGCGACGCCGATCCGCTCTACAGAGCTTGCGTGGCAGAGTGTCAAAGAACCGGCACC
CTGAAAGATGAGGATTCTATCAAACACTGTGTGGTTCCAACTGAAGATCAGCCTGCTGAC
AAATCATGGTACGCGCACGAGCCATTGTACTTGCAGTGGAAGGAGTGGAACTGCAACAGC
GAATGCCGATACCATTGTATGATGGAAAGAGAACAGGAAAGGGAAGAGCTTGGGCTGGGG
CCCGTCAAGTATCATGGCAAATGGCCCCTCAAACGGGCTTCTGTGTTTCAGGAACCTCTT
TCTGCAGCTCTATCTGCTCTCACTCTTCTCGTGCAATTTAATGGATGGCTATCGTTTTTC
CTCTTGCTTTCTTACAAGCTGCCTCTTAGGCCAGAAACCCACGCGACATACTATGAATAC
ACCGGATTATGGCACATTAACGCGCTCTTGGCCATGAATTCATGGTTCTGGTGTGCCATA
TATCACAGTTGTGATACTGCTTGGACAGAAAAGCTGTACCTGTCATCAGCTGCTGCTTTT
CTTGGCTACTCCCTCATCTTGGCCATACTGCGAACTTCGAATCTAAGGGACGAAGCTTCA
AGGGTGATGGTTGCAGCTCCAATTCTGGCTTTTGTGACGACCCACATTTTGTACCTCAAC
TTCTACGAACTTGACAAAGGCCTCAACATGAAGGTTTGCACTGTTATTAGCGTGGCTCAG
CTCCTCCTGTGGACAGTGTGGGCTGCCATCACAAGGCATCCTTCACGCCTGAAGGTCATC
TTTGTTGCTATCGGTGGTGTCCTCTCACTATACCTGGAAGCCCATGATGTCCCTCCGCGA
TGGGGATATGTTGATGGTCACGCAATCTGCCTCGCCATGGCTATCCCCCTGTCGTACCTC
TGGTGGGGCTTCGCCAAGGAAGATGCTGAGATGCGCACGGCGGCAATCATGAAGAAGAAA
CGATAACGGGCTTCGTCAGACCAAATAGTTCCATCTTTCATGGTGAATCTGTGAAAACTT
GTCTCCACTCATCCAATGTAAAGATGAGTTTTTCCATGTAAATTTAGGAGATTTCGCCTG
TGAATTACTGTTTTTTCCATGCTACTTTTTGCCTCAGCCCAGGAGGTTTTACATGGTTTG
AAACTTGTGATAGCCCTATGTATTTCTCTCATTTAAAAGCCAATTGAGTGTGTGATAGGT
TTGTGTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38030.1	348	6e-172	protein\|per1-like family protein, putative, expressed
Brachypodium v1_2	Bradi1g77320.1	349	0.0
Arabidopsis v10	AT1G16560.1	342	2e-110	Per1-like family protein \| chr1:5668945-5670343 FORWARD LENGTH=342