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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15110_PI390587928Hv_44K_v2GGTTATCAAAGTGTAAAAATGCGCCAAGTAAACTGTCATTTCTGTTGAGAAAACAGGTCT654GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4261.3751.1970.9800.3880.391
Raw 2380.6433591.6472761.0073508.403489.063537.873



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_10655.128672e-2412 - 7110060 / 60minus ABC08476 ABC12555 ABC12556
JLOC1JLOC1_6986.130338e-252758 - 281710060 / 60plus
Harvest21ABC125557363e-2523 - 8210060 / 60minusABC12555
Harvest35U35_204447363e-25655 - 71410060 / 60plus



Contig Sequence (736 bp)

>U35_20444 736 Hv_44K_v2
TTAATAATAGCCCCGATGAAACCGCATATTTTAGGATGATGTTGGAGAGGGAAAATGTGG
GCAATGCAGTCGCAATGATTCAACCTTCACTTTTATCCTACTCCTTTCAATCAGGGCCAA
TGCCTGTTCTCTTGGACGCAACTGCAATTGCTCCTGACAAGATCCTTTTGTTGGATTCTT
ATTTTTCTGTCGTTATCTTCCATGGGATGAACATTGCACAATGGCGAAATGCGGGCTACC
AAGATCAAGAAGGCCACGAGGTGTTCGCCCAGCTGTTGAAAGCTCCACATGAGGAAGCCG
ACACAATAATGAAGGAGCGGTTCCCTGTACCCCGTTTGGTTGTCTGTGATCAATATGGAT
CTCAGGCTCGGTTTTTACTGGCAAAGCTAAACCCATCAGTGGCATACAACTCCGATAACC
CTGCCCCCGGAGGAGACGTTATATTCACGGATGACGTGAGCTTCGAGGTTTTCATGGACC
ATCTCCAGCGGTTAGCGGTGCAATAGGTTATATATATATGAATATGACCCTGAGGAGAGC
AATTTTGTACCACCAAAGCGCTCATCTCTTGTGGTGTACAGTAAAGAGGCATTGTTCGTT
CTTGTTTATCGTGTCTTGTTACTTTGTATTGTGTTGACGGGGTTTATGCGCTTCGGTTAT
CAAAGTGTAAAAATGCGCCAAGTAAACTGTCATTTCTGTTGAGAAAACAGGTCTTTTTCA
AAAAAAAAAAAAAAAA



Homology of Contig U35_20444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g36994.17642e-94protein|protein transport protein, putative, expressed
Brachypodium v1_2Bradi4g32280.17634e-103
Arabidopsis v10AT4G14160.17737e-76Sec23/Sec24 protein transport family protein | chr4:8167574-8173026 FORWARD LENGTH=773