- Probe CUST_1510_PI390587928
- Source Contig U35_42233
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1510_PI390587928 | Hv_44K_v2 | GTCAGACCTCCAATTTTCTCATGCTTTGGAGACACAGCTCTTGCTATTAGCGAGAATGTA | 548 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.960 | 1.207 | 1.992 | 1.687 | 0.798 | 0.792 |
| Raw | 176.101 | 341.776 | 497.032 | 693.844 | 108.057 | 120.552 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67900.1 | 4110 | 2e-24 | 3542 - 3601 | 100 | 60 / 60 | plus | ABC08248 ABC38101 |
| MLOC | MLOC_67900.3 | 4181 | 2e-24 | 3690 - 3749 | 100 | 60 / 60 | plus | ABC08248 ABC18711 ABC38101 |
| MLOC | MLOC_67900.4 | 4962 | 2e-24 | 4471 - 4530 | 100 | 60 / 60 | plus | ABC08248 ABC18711 ABC38101 |
| MLOC | MLOC_67900.7 | 3396 | 2e-24 | 2362 - 2421 | 100 | 60 / 60 | plus | ABC08248 |
| MLOC | MLOC_67900.2 | 5053 | 2e-24 | 4485 - 4544 | 100 | 60 / 60 | plus | ABC08248 ABC38101 |
| MLOC | MLOC_67900.5 | 4814 | 2e-24 | 4246 - 4305 | 100 | 60 / 60 | plus | ABC08248 ABC38101 |
| JLOC1 | JLOC1_44874.2 | 5210 | 8e-25 | 4298 - 4357 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44874.1 | 4372 | 8e-25 | 3460 - 3519 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37764 | 651 | 3e-25 | 549 - 608 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42233 | 651 | 3e-25 | 549 - 608 | 100 | 60 / 60 | plus |
Contig Sequence (651 bp)
>U35_42233 651 Hv_44K_v2 GTCTTCCTAATGTCATCGCTGTGCTTCAGATCATGCTGGTACTACCTATTTGAGGCTTCA CACGTCTGCTTTTGAAGGGTCGAATGAGCTTATGAGAGTTAGCAACATAGCTGAAACTTT GAGCATTATAGGCCAGCTATGTCAGGGGATCATGAAAAGACTGAACCTGACATTTTAACT CCAAATACTCTTGCCTGGCGACAGGGAGAAGCAGAGTGATCTACAGGCTTTGTTGTGTGG TGTACTGCAGGTCATCATCCAGAAGCTGAGCAACTCTTATGTGATGTCCGTAATTTCCCA GACTGCTGATAAGTTGATGTTGATGTTTCCCTGTGTCTTTGCTTGCCCCAGTTCTACTAT ACATGAAAAAGCAATGCGGCGTTCGTGTAGCAGGCTTGCAGAAGTACGAAGAATACCAAA TATGCTCCATTTCTGTATGGGTGATGGGTGATATTTGCTGTACCGTTGAAGATAAAGTTC AGCCTTTCTGTGATTGCATTATGACTGTTCTTTTCAAGGATCTTGCAAGTTCAATGCTTC ACCGGTCTGTCAGACCTCCAATTTTCTCATGCTTTGGAGACACAGCTCTTGCTATTAGCG AGAATGTAATACCTGTCATATGCCATGCTAGTGCTTCAAGGAGCTGCTGAG
Homology of Contig U35_42233 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g28510.2 | 869 | 3e-67 | protein|importin subunit beta, putative, expressed |
| Brachypodium v1_2 | Bradi4g00730.1 | 869 | 2e-66 | |
| Arabidopsis v10 | None |