barSeed - Barley Seed Development Database

Probe CUST_15108_PI390587928

Source Contig U35_20446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15108_PI390587928	Hv_44K_v2	AGACCGCCAGCATGTGTTTGGTTGTACAATGATAATAATTGTTAATAGCTTTGCTTAATG	648	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19593.1	3392	2e-24	208 - 267	100	60 / 60	minus	ABC12652
MLOC	MLOC_19593.2	1738	2e-24	5 - 64	100	60 / 60	minus	ABC12652
MLOC	MLOC_19593.3	1998	6e-24	1 - 59	100	59 / 59	minus	ABC12652
JLOC1	JLOC1_13574.2	1887	8e-25	1687 - 1746	100	60 / 60	plus
JLOC1	JLOC1_13574.1	1837	8e-25	1637 - 1696	100	60 / 60	plus
Harvest21	ABC12652	726	3e-25	19 - 78	100	60 / 60	minus	ABC12652
Harvest35	U35_20446	726	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_20446 726 Hv_44K_v2
GAACTTTCCACCAATGGTGCCGATGCCAGGTTTCTGTGGCCCACCCATTCCTTTCCCACT
AATGCCGCCTTCCGTTTGGCCATTGGTTTCTCCTTGGCCTAATGGTGCATGGAGCGCGCC
ATGGCTTGGACCTAGTTATAACATGTCAGCAGCACCTCCAACAAGCACTAGTACATGTTC
AGATAGTGGTTCTCCAGTCCTTGGCAAACACCCTAGGGATTCTGATCCACAAGGTGGTGA
GAAGGCAGAAAAATCCTTGTGGATTCCCAAGACACTCCGGATTGATGACCCCGACGAAGC
TGCAAAGAGTTCGATCTGGACCACCCTGGGGATTGAACCCGGCGAGCGTGGCATGTTTAG
ACCGTTCCAGCAGAAATCTGGTGGCAGGGAGCAGATGTCCAACGCAGCCCGAGTCATGCA
AGCGAACCCTGCGGCTCAATCCCGCTTTGAGTCTTTCCAGGAGACGACGTGATACGTAAA
ATTCCGCCGTTTCTTTTCCCCCTTCAAGCATGTTATATCAAGAAAACGATGTTGTCTGAG
CACTGATCGGCGATGTAGATGTTGTGCAACTGTACTATCGGATAGCGGTGTTTTTCTTTT
CCTGTAATATCCTTGTAGAGCTTGTAACACTCCACCGGGCTCATGACCAGACCGCCAGCA
TGTGTTTGGTTGTACAATGATAATAATTGTTAATAGCTTTGCTTAATGCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_20446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g17410.1	444	2e-69
Arabidopsis v10	None