- Probe CUST_15106_PI390587928
- Source Contig U35_20448
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15106_PI390587928 | Hv_44K_v2 | GCATGTTCGATGCAACAAATACTACTTTTCCCATTTCCTTATTAGCTTGTTTCTCAACAT | 358 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.015 | 0.210 | 4.633 | 13.352 | 24.129 |
| Raw | 2.968 | 34.663 | 707.113 | 24219.550 | 23565.633 | 46961.900 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_25390.1 | 1155 | 2e-24 | 581 - 640 | 100 | 60 / 60 | minus | ABC12825 |
| JLOC1 | JLOC1_17352.1 | 579 | 8e-25 | 155 - 214 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC12825 | 449 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | ABC12825 |
| Harvest35 | U35_20448 | 449 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus |
Contig Sequence (449 bp)
>U35_20448 449 Hv_44K_v2 GCAAAATGTAGTGTTTGTGTCACCAAGGAGGAGAGCCTCCGGCAAAGCTAGTGGCTGGTT TCTCCCTTGGCGTGTGCGTGTATCTGTTGAGTCTTTCCCCTGCGTGAGTGTGTCCTTGTG TGTTTGAGAGAAACAACCAGAGAGATAGAGAGAGAACTATGAGAGGCAGCTCGAGGAGGA AGAAGAAGCGGCGCTGCAAGGAGGCGGCACCAACAGTCATGTACTCAGCTAGTAGGAAAA ACTATGCACAAGCTAATAAGCGGGAAGAAAAGATGCAGGGAAAAGCTAAAGGAGATAAGA AGTAAGCTCTCAGGGGATATTGTTGCTTCTCGTATTGTGCACGAATCGGAGCTGAAAAGC ATGTTCGATGCAACAAATACTACTTTTCCCATTTCCTTATTAGCTTGTTTCTCAACATAA CAAGTAAATGAGTATGTTGTGTTTTCCCA
Homology of Contig U35_20448 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |