barSeed - Barley Seed Development Database

Probe CUST_15104_PI390587928

Source Contig U35_32420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15104_PI390587928	Hv_44K_v2	AGAGGCTCAATTAAGAAAGCAAGACATTGCCAAGAACAAGATTCTGCAGAGGCAGGATGC	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43306.1	487	3e-21	225 - 284	97	58 / 60	plus	None
MLOC	MLOC_43306.2	1073	3e-21	225 - 284	97	58 / 60	plus	ABC17636
JLOC1	JLOC1_27992.1	1073	2e-21	225 - 284	97	58 / 60	plus
Harvest35	U35_32420	501	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_32420 501 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCTAATGATGACCCAAGAAAGTTGCGACCTGGGGAGATAG
ATCCAAACCCTGAGTCAAAACCTGCACGTCCAGATCCTGTTGACATGGACGAGGATGAAA
AGGAAATGCTTTCTGAGGCAAGGGCACGCTTAGCTAACACCAGGGGTAAAAAGGCAAAAC
GGAAGGCAAGAGAGAAACAGCTTGAAGAGGCGAGGCGGCTTGCATCACTGCAAAAAAGGA
GAGAACTGAAGGCAGCTGGTATTGACAACCGGCACAAAAAAAGAAAGAGAAAGGGAATTG
ACTATAATGCCGAGATCCCTTTTGAAAAGAGACCCCCTCCAGGTTTTTATGATACAGTGG
GCGAGGACAGGCCACTTGAGCATGTGCAGTTTCCAACTACCATTGAGGAGCTTGAAGGGA
GGAGAAGAGTGGATGTAGAGGCTCAATTAAGAAAGCAAGACATTGCCAAGAACAAGATTC
TGCAGAGGCAGGATGCCCCTG

Homology of Contig U35_32420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28090.1	973	2e-84	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g07110.1	983	3e-87
Arabidopsis v10	AT1G09770.1	844	7e-77	\| Symbols: ATCDC5, CDC5, ATMYBCDC5 \| cell division cycle 5 \| chr1:3162002-3165122 FORWARD LENGTH=844