- Probe CUST_15101_PI390587928
- Source Contig U35_32423
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15101_PI390587928 | Hv_44K_v2 | GAGATTAAACTTGTATGTTCCGAGGACTGTTTGCCAGGTTCAGTGAGTTCATCTGGTTGG | 419 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.421 | 0.839 | 1.383 | 1.020 | 0.707 | 0.589 |
| Raw | 17.222 | 14.037 | 22.545 | 25.240 | 5.137 | 5.304 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371357 | 4388 | 2e-24 | 1711 - 1770 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12190.2 | 4688 | 2e-24 | 3412 - 3471 | 100 | 60 / 60 | minus | ABC04155 ABC43329 ABC49719 |
| JLOC1 | JLOC1_8169.1 | 3898 | 8e-25 | 1119 - 1178 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32423 | 483 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus |
Contig Sequence (483 bp)
>U35_32423 483 Hv_44K_v2 GCGAAACTTCAGTTGCATTAGTTATTGATGGCCCCCGTATCCTTGTAACTCCGCTCCATT TGGGCCTCATGCCACCCCCTATGTCTCTGTTCCATCTCGCATTTCCTTGTGCAGTGAATG AGGTTTGTTTTGTATCCAAGAACTCAAAGAACCATTTGACTGCTTATCTTTCAAATGGCA GCTTATGTGTTGTGGAATTTCCAGCAGCAGATACATGGGAAGAATTTGAGGGCAATGGGA TAACTGTTGACCCTTGCCATTGTGACTTCAGTTTGAATAATTCTATGCATCTCACTTGGA TAGATACACGTACCTTAATTGGTATCTGTGGCTGCAGTGATTACTGCTCTTCAACACCCA TGAGGTCCAGTGAAGCTGGTAACTTCGAAGAAAAACATGATTCTCTGTTCTTTGTCAATG AGATTAAACTTGTATGTTCCGAGGACTGTTTGCCAGGTTCAGTGAGTTCATCTGGTTGGC AGC
Homology of Contig U35_32423 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g37640.1 | 1344 | 8e-74 | protein|IKI3 family protein, expressed |
| Brachypodium v1_2 | Bradi1g24690.1 | 1330 | 7e-86 | |
| Arabidopsis v10 | None |