barSeed - Barley Seed Development Database

Probe CUST_150_PI415269222

Source Contig TA34186_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_150_PI415269222	Hv_44K_v2	ATGGGAGTATGGGCTAAGATGTTCAAAATGTTTTATCCGGTGCTTGTTCTGTTCAGCGGC	1806	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.653	2.604	1.250	0.820	0.342	0.385
Raw	1865.317	2823.800	1201.519	1227.034	178.255	223.072

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60000.1	4304	3e-21	2400 - 2453	100	54 / 54	plus	ABC07752
MLOC	MLOC_60000.2	4232	3e-21	2400 - 2453	100	54 / 54	plus	ABC07752
MLOC	MLOC_59999.1	4399	3e-21	2355 - 2408	100	54 / 54	plus	ABC07752
JLOC1	JLOC1_39096.1	2455	2e-21	1696 - 1749	100	54 / 54	plus
Harvest21	ABC07752	1869	6e-22	1798 - 1851	100	54 / 54	plus	ABC07752
Harvest35	U35_16683	1480	6e-22	1409 - 1462	100	54 / 54	plus

Contig Sequence (2129 bp)

>TA34186_4513 2129 Hv_44K_v2
CGGCACGAGGGTCGTCTCCCCGGCCCCGCCGCCGCCGCCGCCTCGACGCCCGGCCTTCGC
GCCCTCCCACCCCCACCCCCACCATCGCCACGCCGCGCACCATCGCTACGATCCGCCGCG
AGGTGCCGGCAGCGTCCCGCCTGCTGGATCCGATAAGGACGGACGTGAATTTCATAACAA
AGAAGGGAAGGGACTGAAGGAAGCGGAGAACGTTGCTGATGCTAAAGGTCTACGGTTGAA
TTCTCCTGTTACTAATGAAGGGGAGACAAATTCTAGCCAGCAAACTGTTGCTGAAGGAAG
CAGCAAATTGGTTCCAACTCCTGTAGAATATACAACCAGTGAAATCATTGATGGCAAGCC
GGTTAATACTGTTGAAGGGCTCAAGGTCTATGAAGGCTTGGTAAATGTGACTGAGATAAA
CAAGATTGTTTCTTTAGTTAATGAAACAAAAGCTTCTTCTCGTCGAGGAGGGTTTGAAGT
GGGCCAGACTGTTATTGTTGGTAAAAGACCACTGAAGGGTCATGGAAGCGTAATTATTCA
GCTGGGAATTCCTATCATTGAAGGCCCTCTTGAGGATGAAAATCAAAGAGAGACAAGGGT
GGAGCCTGTTCCTGGGATGCTGCATGATCTGTTTGATCGCTTCTTTCGGCAGGGAATTGT
ACCTTCTAAGCCAGACTATTGTGTTGTCGACTTCTACTGTGAGGAGGAATATTCTCATCC
CCAGCAACCTCCATCTTGGTATGGTAGACCACTTTGTACCCTCTGCCTCACAGAGTGTGA
TATGGTGTTTGGCCGAGTTATCTTTGGAGAACGAGGTGATAACAGAGGCCCTTTGAAGCT
CTCTCTCTCTACAGGGTCTCTTGTAGTGTTGCAAGGGAGAAGTGCTGATGTAGCCAAGCG
AGCTATTCCTGCTACACGGAAGCAGCGAATCCTTCTAACTTTCGGGAAGTCTGTGGCAAG
AAAACTTGCACCATTGGAAAGTGCTTCACGGCCTACTGCCCCGTTAACACCTCCTGCTAT
GCCCTGGGGTCCACCATCAAGGCCAGCTAACGTGAGGCCACATTCCCCAAGTCCGCAGCA
CTTTGGATACACCCCAACCAGCAGCGTACTTCCAGCACCAACAATTGGACCTCATCACAT
CCCTCCATCGGATGGAATGCAGCCACTCTTTGTAGCACCTGCTCCTGTTGCTGCCGCAGC
CATACCTTTCCCAGCAGCTGTTCCCTTGCCAAATGCAACGGCAGCTTGGATGCCAGAAGC
CGCCCCAAGGCCTGCCCCACCTCGATTCCCTGTTCCAGGCACAGGTGTCTTCCTTCCTCC
TGGATCAGGACACCAGCTGCCCCATCAGATGATACAAGCTTCCCATGCTCATGTGGAACC
GAACTCTCCAAGAGGTTCAGCAGCTTATGTGGCTAATGGTAGTGCTTCTCCAAAGAGCTC
AGGAACAACAAAAAGGGCTGATACAATCGAGGCAAAACCAGAGTGCAATGGGAGCTCTAA
TTCTGTGGGTGAGCAGCAGCAGAACGGTGGGATGAAGAATGGTGGGCTCAGCAAGGTTGA
GCCAAGTGCCTCTAAATAGAAGGGAGGTATAGTACATAGAGAAGAAAAACATGAGACGAG
GAAACTTCATTTTTCCAGGTCATGATTGCGGGCAACTCTCTTATCCTTGACAAATGACAC
GAGTACAAGTGCCCTTGATGCCATGGAATTGTCTTGAGAATGAAAGCCGTCTTAAATTTT
GTAGCCGCTCTGTAGCAAAACTGGATATATCATGCTGCTTTAATCTATCACCTGCTTGCT
ACAATTATGGGAGTATGGGCTAAGATGTTCAAAATGTTTTATCCGGTGCTTGTTCTGTTC
AGCGGCCGCTGGCAGCGGATGAAGCAACGGCTGGGCACTTCCTGCAAATTTTGACTAGGA
CCATAGAGCAACACGGAAGAAACATTGTACTGTTGCCTGTGTTGCTTTTGGAGCTAGTGC
AGCAAAGATATGATCATATCTACTACTTCGGCCGATGTTGCAGTATAACTGCCTCAAGCT
ATGTTCATCAGGTAGACGAGATCGAAGGCTGGTGATGGGTTTGGAGGACTGCTATACACG
TTTTACTAGTTATGTTAATTAAAACCGAG

Homology of Contig TA34186_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13560.1	659	0.0	protein\|hydroxyproline-rich glycoprotein family protein, putative, expressed
Brachypodium v1_2	Bradi1g68600.1	670	0.0
Arabidopsis v10	AT1G14710.1	601	8e-61	hydroxyproline-rich glycoprotein family protein \| chr1:5062168-5064697 REVERSE LENGTH=601