- Probe CUST_15098_PI390587928
- Source Contig U35_18131
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15098_PI390587928 | Hv_44K_v2 | GTCTTGATTTAGCCATCGAGAGGCTGAAGGAACAGGTTACTAAATCTAAGAATCTTTCTC | 592 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371393 | 3526 | 2e-24 | 2158 - 2217 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.8 | 2569 | 2e-24 | 2244 - 2303 | 100 | 60 / 60 | plus | ABC08786 |
| MLOC | MLOC_13948.9 | 2133 | 2e-24 | 1814 - 1873 | 100 | 60 / 60 | plus | ABC08786 |
| MLOC | MLOC_13948.2 | 2667 | 2e-24 | 2348 - 2407 | 100 | 60 / 60 | plus | ABC08786 |
| MLOC | MLOC_13948.5 | 2599 | 2e-24 | 2272 - 2331 | 100 | 60 / 60 | plus | ABC08786 |
| MLOC | MLOC_13948.6 | 2476 | 2e-24 | 2115 - 2174 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.3 | 2805 | 2e-24 | 2442 - 2501 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.4 | 2568 | 2e-24 | 2196 - 2255 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.7 | 2500 | 2e-24 | 2139 - 2198 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| JLOC1 | JLOC1_9491.7 | 2573 | 8e-25 | 2090 - 2149 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.6 | 2659 | 8e-25 | 2176 - 2235 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.5 | 2551 | 8e-25 | 2068 - 2127 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.4 | 2639 | 8e-25 | 2156 - 2215 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.3 | 2617 | 8e-25 | 2134 - 2193 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.2 | 2681 | 8e-25 | 2198 - 2257 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.1 | 2615 | 8e-25 | 2132 - 2191 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08785 | 655 | 3e-25 | 593 - 652 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18131 | 655 | 3e-25 | 593 - 652 | 100 | 60 / 60 | plus |
Contig Sequence (655 bp)
>U35_18131 655 Hv_44K_v2 GAGGGTATTGTCTACTTTCCAGACAGTTCCCAGTGGTTATCTAGAGCAGTTTCAAAATCA GATCACAGGGAGTTTATCCAAAAGGTAGACGAAATGTTCGACCAACTCACTGGACCAGTA GTAATGATATGTGGGCAGAACATGCTGGCAGCAGTATCCAAGGACAAGGACAAGGACAAG GAACCTCCGACACTGATGTTTCAGAATCTCACTCGCCTGTCTTCAGTGCCATCATCCCTG AAGCGTTGGCTAAAAAGACAAAATGATGATTCAGTATCCAGTGGTATATCAAAGATCTTC ACAAACAGTTTTGTTGTTCCCCTTCCAGAGGAAGGTGAGCAACTGAGAGTTTTCAATAAC CAGATTGAGGAGGATAGGAAAATTATTATTTCAAGGCATAACCTTATTGAATTACACAAG GTTCTTGAAGAGAATGAACTATCATGCGTGGAGCTTATGCATGTGAAGTCTGACGGTGTT GTTTTGTCAAAGCAAAAAGCGGCGAAAGTTATTGGATGGGCCAGAAGTCATTATCTGTCA TCAACAGTTCTTCCCTCTATCGAGGGTGACAGATTAACCATTCCACGTGAGAGTCTTGAT TTAGCCATCGAGAGGCTGAAGGAACAGGTTACTAAATCTAAGAATCTTTCTCTAA
Homology of Contig U35_18131 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g51400.1 | 976 | 1e-104 | protein|AAA family ATPase, putative, expressed |
| Brachypodium v1_2 | Bradi3g59247.2 | 968 | 5e-113 | |
| Arabidopsis v10 | AT3G19740.1 | 993 | 1e-61 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6855944-6862930 REVERSE LENGTH=993 |