barSeed - Barley Seed Development Database

Probe CUST_15090_PI390587928

Source Contig U35_32429

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15090_PI390587928	Hv_44K_v2	GCTCCAGCTCGAGATGGCCTCCCGCCTTGCCTCCGACGCCTGCACGCCGCCCGCCCGCTG	360	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.980	0.962	1.022	0.773	1.275	1.494
Raw	764.316	1065.427	1075.924	1074.305	718.374	941.240

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26365.3	3528	2e-24	354 - 413	100	60 / 60	plus	None
MLOC	MLOC_26365.5	2555	2e-24	2171 - 2230	100	60 / 60	minus	None
MLOC	MLOC_26365.1	3352	2e-24	2944 - 3003	100	60 / 60	minus	None
MLOC	MLOC_26365.8	2628	2e-24	2244 - 2303	100	60 / 60	minus	None
MLOC	MLOC_26365.6	2642	2e-24	2275 - 2334	100	60 / 60	minus	None
JLOC1	JLOC1_17907.2	3231	8e-25	116 - 175	100	60 / 60	plus
JLOC1	JLOC1_17907.1	2941	8e-25	116 - 175	100	60 / 60	plus
Harvest35	U35_32429	438	3e-25	361 - 420	100	60 / 60	plus

Contig Sequence (438 bp)

>U35_32429 438 Hv_44K_v2
CTAAATCCGGCGAACCGAAACGGCAAAACCCCACCTAAAACCTCGCCAGCCGCCACCGCC
GACGGCGACCATGCGCCGTCATCTCGACCTGCTCCCCCGCCTCCTCCTCCGTCGCCACGT
CCACCGCCGCGCCAGGACCGGGGCCTCGCCGCCCCCGCCCCCGCCGCCGAACCCGCCGCG
CCCGCCGCAGAAGCCCGAGCCCGTCACCATCCACGGGGAGACGTGGCACGACAGCTACGC
CTGGATGGGCTCGCTCTCCGACGCCGCCGCCATGCGCCACATGGACATCCACATGGAGGC
CGAGGAGAAGTACGCCGAGGCCTGCCTCGCCGCCGCCGGCGCTGACCGGCTCGCCCGCAA
GCTCCAGCTCGAGATGGCCTCCCGCCTTGCCTCCGACGCCTGCACGCCGCCCGCCCGCTG
NNGGCCCTGGCTCTACTA

Homology of Contig U35_32429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None