- Probe CUST_1508_PI390587928
- Source Contig U35_42235
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1508_PI390587928 | Hv_44K_v2 | CAGGAAATTCATTTTCGACACGGTTGTACATAGCATCTTTCAGTTTAGAAGCATCTTGTT | 46 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.394 | 1.616 | 1.137 | 0.775 | 0.297 | 0.307 |
| Raw | 714.566 | 1284.845 | 804.819 | 860.641 | 115.975 | 131.058 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_40775.1 | 610 | 2e-24 | 215 - 274 | 100 | 60 / 60 | minus | ABC37772 |
| JLOC1 | JLOC1_26629.1 | 739 | 8e-25 | 220 - 279 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC37772 | 558 | 3e-25 | 47 - 106 | 100 | 60 / 60 | minus | ABC37772 |
| Harvest35 | U35_42235 | 558 | 3e-25 | 47 - 106 | 100 | 60 / 60 | minus |
Contig Sequence (558 bp)
>U35_42235 558 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCAAGCGAGCAAACATAAAACAAAAGATAAACAAGATGCTTCT AAACTGAAAGATGCTATGTACAACCGTGTCGAAAATGAATTTCCTGAACTAGACAAACTT GCTTCAAAAAGAATTAACTAAAAAAACAGCAAATATAAGAATTAATCCCCGTCGCCAACG CCAAGCCATTCCCGGAATCCAGCGAGGATTGCACCCTTCCGCAATGGATAACGATGTCAA ACTGAACACCAAAACTACAAATCAGAGAAGCTGATGCCGGAGCTGCTGGTTTTCCCTTCT CAGTTGCTGCACTTCCTTGGTCAGGCCTTCCAGCTTCTCCAGGACCAAGTTCATAACACC AGATGTTTCCATCTCCTGCATGTGAAACTGTCTTAGAAGTTCAATGTGGAGATTTCTCAC ATCCTCATGTATAGACTTGTGAACAGATCCTAGAGATTCCTCGAGCATGCGCTGAACATA CTGAAGGGAGAACGAAGAAGCTCCCTGTTGATCAGCTGACGAACCTGAAGTTGGCAATTG AGGTGGCACTACCCCATT
Homology of Contig U35_42235 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |