barSeed - Barley Seed Development Database

Probe CUST_15080_PI390587928

Source Contig U35_44406

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15080_PI390587928	Hv_44K_v2	TAGAAAGAAGGTACTGGGTATGATGGAAATAATGATGCCGCCACGGTCTTCTTGTAACCG	38	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.804	2.251	1.402	0.631	0.301	0.270
Raw	45.830	84.912	48.838	33.553	5.293	4.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_3721.2	2450	6e-21	2310 - 2367	97	58 / 60	plus
JLOC1	JLOC1_3721.1	2789	6e-21	2649 - 2706	97	58 / 60	plus
Harvest21	ABC42087	360	3e-25	39 - 98	100	60 / 60	minus
Harvest35	U35_44406	360	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (360 bp)

>U35_44406 360 Hv_44K_v2
ATAGACATACTGAAACTACCGACGAAAGCATGCTTTGCCGGTTACAAGAAGACCGTGGCG
GCATCATTATTTCCATCATACCCAGTACCTTCTTTCTACAGGTTACAGCGAGAGATCATG
GGAGCTTTGTGACGACCAGAGGCATGCCAAACCCAGGCTCGATGGTAAGCCGGAACAGCG
GCGCGTGCCTGTACCCCGGTGACGGCGAGAAGGCGAACTTGCTCAGCAGGCGAACGAGCA
CCACCTTGAGCTCCACCATCGCCAGGTTCTGCCCCGCGCAAATCCTGGGCCCGTGCCCGA
ACGGCAGGTACATGTGCGACGGCTCGCACGCCGCCGCGGCGCCGTTCACGAACCGGTCCG

Homology of Contig U35_44406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None