barSeed - Barley Seed Development Database

Probe CUST_15069_PI390587928

Source Contig U35_20459

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15069_PI390587928	Hv_44K_v2	ATTCGAGTTCATCGTTATCTTCTTTTTCTTCTGCTGCTGTTGGATGCTGCACGGACATGC	1278	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.209	1.482	1.100	1.002	0.396	0.506
Raw	120.788	231.865	149.072	219.040	31.050	41.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366255	1804	2e-24	1357 - 1416	100	60 / 60	plus	ABC12885
MLOC	MLOC_62654.3	1488	2e-24	1216 - 1275	100	60 / 60	plus	ABC12885
MLOC	MLOC_62654.5	1599	2e-24	1254 - 1313	100	60 / 60	plus	ABC12885
MLOC	MLOC_62654.1	1330	2e-24	985 - 1044	100	60 / 60	plus	ABC12885
MLOC	MLOC_62654.4	1566	2e-24	1183 - 1242	100	60 / 60	plus	ABC12885
MLOC	MLOC_62654.2	1608	2e-24	1242 - 1301	100	60 / 60	plus	ABC12885
JLOC1	JLOC1_41021.4	1520	8e-25	1110 - 1169	100	60 / 60	plus
JLOC1	JLOC1_41021.3	1595	8e-25	1185 - 1244	100	60 / 60	plus
JLOC1	JLOC1_41021.2	1533	8e-25	1123 - 1182	100	60 / 60	plus
JLOC1	JLOC1_41021.1	1656	8e-25	1246 - 1305	100	60 / 60	plus
Harvest21	ABC12885	1603	3e-25	1279 - 1338	100	60 / 60	plus	ABC12885
Harvest35	U35_20459	1603	3e-25	1279 - 1338	100	60 / 60	plus

Contig Sequence (1603 bp)

>U35_20459 1603 Hv_44K_v2
GCACCCGGGACGCCACTCCGCCGCATGAGCCGGGCCGCCTCCCAGCCCCACCGGCGTCCG
CAGCCATGGGAGCCCAGCAGAGCGTCAATGCCGGCAAAGCCAAGGTGGATTTGCACGTCG
ACCTCACCCACATGCTCTGCGAGGCCCTCCTGCTGCCGCCCCTGAGCTCCAGCGCCACCA
TCTCGCAGATCGTCGGAAGGATCTCCCTCAAGCACCCGAGCCTGTTTGGGAGGAGCGAGA
AGTTGGACGTGGTACTGGATAAGGGTGTCAATGACTCTAATGTCGTTGTTGCCTTCAGGC
GCCCAAGGCCCGAATGGTTATCGCAGCAGTCGTTTGTCATTCAGCACTCGATGACACCAG
AAGTTGCGGTGCATGGTTTTCCTGCTGACAACTTCACACGGTCAGGGAGCAGAGGGGTAA
ATCTAAGTCGGTTGTCGCTTGGCGTGGAGATTAATGAACCGACAACATCAAACTGGACTT
CTGGAACCAGTGTTAAGTTTGAGCATATCCGTCCTGTTAATAATGATGGGCGTTCCATAT
CCAGGGACCACGATGGCTTTCCCCTAACATGCAGTGGTAACCTCCATGACAACATGATTA
TCTTGAAGCAAGAGTCTGGCTACGCAGATGTTAAGGATAATAGCTTCTTAAGAGTTAATT
TCCAAATGGAACAAGGATTGCCACTTGTACCAAAATCACTGACTTTTAACAGAGTGAAAT
GTACTGTTTCGAAAGGCATTAAATTGGGGCCAACATTTTTGGTTACTAGCTTGACAGGCG
GTTCCATTGTGGGCGACATGGCACCGTATCAAGCATTTGCAATAGGTGGACTTGGTAGTG
TCCGGGGTTATGGCGAGGGTGCAGTTGGTTCAGGAAGACTGTGCCTAATTGGTAACTGCG
AATATACGGTCCCTTTGGCAAAGAATCTCGAAGGTTCACTGTTCATGGACCGCGGTAGTG
ATTTAGGATCTGCTCGTCATGTTCCTGGCAATCCAGCTCTTCGGCAGGGGAAACCGGGAT
TCGGTGTTGGGTTCGGGTACGGTGTCCACTTCAACACGGACATAGGTCAAATCCGGGTCG
ACTACGCCATGAACGCCTTCAGTCGCAAGACCTTCTACTTCAGCATCAACAGTGGTGGTG
CTGGCTCATAGATCATCCAGCACATACCTGACATAGCATAGAGTTTACAAGCCATGACAT
GAGATCATTCCCAGCAATTTTCCATTCCAACGTGCCTGGACGCAACAAGCCGGTGTCGGA
GGCATTCGAGGGCTGTACATTCGAGTTCATCGTTATCTTCTTTTTCTTCTGCTGCTGTTG
GATGCTGCACGGACATGCCATGGGACGACATCTGCAGAGAACAAAGGTGTGGCCTGCACA
GCGTCGTCGGTCGAAGGTGTCACGCCGTCTTATTCTTTCGTACAAAAATAATTCGGCCCC
TTAGTCGAGGGAGAAATATGTTTTCTTTTCCTCTATTTTCCTCTTTTTTTTTTTTCATGA
ACTGTACAGTGTTAGGAGGAGCTGTTTGATTTGCCGCCACGAAATTTTCGGCCCGAAATG
CTGTCACGATCATCGCTAATCTGACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43470.1	362	0.0	protein\|outer membrane protein, OMP85 family, putative, expressed
Brachypodium v1_2	Bradi2g20290.1	362	0.0
Arabidopsis v10	AT3G44160.1	362	4e-154	Outer membrane OMP85 family protein \| chr3:15889225-15891814 REVERSE LENGTH=362