barSeed - Barley Seed Development Database

Probe CUST_15057_PI390587928

Source Contig U35_18743

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15057_PI390587928	Hv_44K_v2	CTTGAGACAGATCTTAGTGGTAGTTGGCTAGTTGTGTATAATAAAACATGTATCACATCA	2156	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.132	1.944	1.199	0.745	0.322	0.351
Raw	909.800	1286.466	696.501	677.486	103.263	123.644

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250329.1	2306	2e-24	2226 - 2285	100	60 / 60	plus	ABC10063
MLOC	MLOC_52009.4	1088	2e-24	61 - 120	100	60 / 60	minus	ABC10063
MLOC	MLOC_52009.3	1042	2e-24	61 - 120	100	60 / 60	minus	ABC10063
MLOC	MLOC_52009.2	1160	2e-24	61 - 120	100	60 / 60	minus	ABC10063
MLOC	MLOC_52009.1	1327	2e-24	163 - 222	100	60 / 60	minus	ABC10063
JLOC1	JLOC1_33264.2	1280	8e-25	1000 - 1059	100	60 / 60	plus
JLOC1	JLOC1_33264.1	1271	8e-25	991 - 1050	100	60 / 60	plus
Harvest21	ABC10063	2241	3e-25	2157 - 2216	100	60 / 60	plus	ABC10063
Harvest35	U35_18743	2241	3e-25	2157 - 2216	100	60 / 60	plus

Contig Sequence (2241 bp)

>U35_18743 2241 Hv_44K_v2
CATTCTTCCTTGATGTCCTCGTCTCAATCTCTCATCCTCCTTCTCACTTCCCCTCTCCCC
CCGCCTCCTCGTGTCGTCGCCGCCATCCCACCATCCTCGCGCCCCACCACCGCTAGCCGC
TTCCGCCACCTCCCGCGCCTCACCGCCAATCTCCGCCTTCCGCCGCTCGCGACCTCCGGT
TCCGGCGGATTCGGAGATGGCAATTTCCATGGTGGGGGTGGGGGTGGCGGAGGAGGAGGG
GGTTGGTGGCAAGGCGGGAGAGGAGACCCTCCCGACAAGCCCGGAGACGGGTGGCGACGG
TGGCTTCAGTCCCTCTATCCCGAGCTCTTCCTCTTGTTCTTGCTCCTCCAGTCCGACGCC
TTCGCTTCCATCCCATCCGCCCTCGCGGATGCCCTCGGAGCAACCGGCGGTGGCGTCTGG
GAGGTGAGGGGCAGTGCGCGTACGCTGCTCGTACCCAACCCGACCGGAACTTCATACCTC
GTTGCGGGAGACGATAAGCGGAAGCAAGAAGAGGGGATTGAAAAGACGGGGGCCGGCCCT
GCTAATTTTGCCGAACTGCGGAGGCAACTTGAACGGTCATGGCGGCGATGCACAGATGTT
GCTCTTCAGTTGCTGCTGCCTGATGGATACCCGCACAGCGTGAGCAGCGACTACCTGCAC
TACTCGCTGTGGCGGGGCGTGCAAGGTGTTGCTAGCCAGATCAGCGGCGTGCTCTCTACG
CAGGCGTTGCTGTATGCAGTTGGTTTGGGTAAAGGAGCGATTCCTACGGCCGCCGCAGTG
AATTGGGTGCTGAAAGATGGGCTTGGCTACTTGAGCAAGATACTGTTGTCGAAATTTGGG
CGACATTTTGATGTGAACCCCAAGGGATGGCGGCTGTTTGCAGATCTTCTGGAAAACACA
GCTTATGGGCTGGAGATTTTGACTCCGGTGTTTCCTCACCTGTTTGTTCCCATTGGTGCA
GCCGCTGGAGCTGGCCGATCAGCAGCTGCTCTGATACAGGCTGCCACAAGAAGTTGTTTC
TTTGCTGGCTTTGCTGTCCAGAGAAACTTTGCTGAGGTCATTGCAAAGGGTGAAGCTCAG
GGAATGGTTAGCAAGTTTGTTGGCATAATGCTTGGGATAGCCTTAGCTAACCAAATTGGC
TCATCAGTACCACTGGCTCTTATTTCATTTGCTGGTGTTACTGTAGTTCACATGTATTGC
AACCTTAAGTCTTATCAATCAATTCAGCTGAGGACACTGAATCCTTACCGTGCAAGTTTG
GTATTTAGTGAATATTTATTAAGTGGACAAGTTCCTTCAGTCAAAGAGGTTAACGATGAG
GAGCCGCTTTTTCCGAATTCATCAATGGGTGCTCAACTTAAACAAAGTGAGATTTTGTCA
GCAGAAGCAAAAGATGCTGCAGATACAATCTATCGACGGTTACAATTGGGTTCTAAGCTT
AGTGAAATAATTGAGAACAAGGAAGATGCATATGCACTGTTTGATTTGTACAAAAACGAG
CAATACCTTCTTACTGATTACAAGGGGAAATTTTGTGTTGTTCTTAAAGAAGGATCTTCC
CCAGAAGACATGCTCAAATCTGTATTCCATGTTAACTATCTGTACTGGTTAGAGAAATAT
ATGGGTTTCAAACCATTCAATGTTGCCTCCGAGTGTAGACCAGGTGGAAGGCTTGAAGCA
TCACTGGATTATGTTCAGAGGGAGTTTAGACATGTCAAGCATGATGGTTCAAATGGTGGC
TGGGTGATGGATGGTCTGATTGCTAGACCCTTGCCTGTAAGAATACGTGTTGGTGATGTT
CTTTGATAGGAATCTTCGATTCATTTTGCCCACAGCTACGCTTATTAGAATTGTACAGCC
TCTTATTCTTTGATCAATTTAGGGATACAAGGTTATTGCAAAGCTGATTGATTCTTCCAT
TTTATTGGGCAAGTGAATGAACTAGTAGTCGGCAATCTGAGTGGCCAGAATAAGCTGCAA
AGTTCATTACCTGGTTGCTATCATAAGGCTGTAGCTGGCTATATCTTTGGTCTCGTTTCT
CCCAAGATTTTTGTTGTTGTTGTTTTTTGACTTTTGAAGCTTGTAGTGGCTGGTCACAAA
AATAAGAGCACTTCTCTGGCAATTATAGAGATTGAGATTGTTAATAGAGGATTGTGCTTG
AGACAGATCTTAGTGGTAGTTGGCTAGTTGTGTATAATAAAACATGTATCACATCATTAT
TGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g22360.1	594	protein\|DUF647 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g05170.1	605
Arabidopsis v10	AT3G45890.1	608	\| Symbols: RUS1 \| Protein of unknown function, DUF647 \| chr3:16871697-16874100 FORWARD LENGTH=608