barSeed - Barley Seed Development Database

Probe CUST_15052_PI390587928

Source Contig U35_18748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15052_PI390587928	Hv_44K_v2	ATACCCGAATTCGGGAAACAAGTATGTTATTATGTATGTAAGAGCGTATATATTCGACCA	714	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.726	4.001	1.006	0.548	3.912	0.352
Raw	82.849	152.488	30.421	25.815	58.305	5.271

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45757.5	1983	8e-25	1845 - 1904	100	60 / 60	plus
JLOC1	JLOC1_45757.4	2102	8e-25	1964 - 2023	100	60 / 60	plus
JLOC1	JLOC1_45757.3	2120	8e-25	1982 - 2041	100	60 / 60	plus
JLOC1	JLOC1_45757.2	2123	8e-25	1985 - 2044	100	60 / 60	plus
JLOC1	JLOC1_45757.1	2058	8e-25	1920 - 1979	100	60 / 60	plus
Harvest21	ABC13305	677	3e-25	34 - 93	100	60 / 60	minus	ABC13305
Harvest35	U35_18748	790	3e-25	715 - 774	100	60 / 60	plus

Contig Sequence (790 bp)

>U35_18748 790 Hv_44K_v2
TCTGGCTCTCGGGCTCGCGAACCAGCTCACCAACATACTCAGGGATGTCGGAGAAGATGC
AAGAAGAGGAAGGATATATTTGCCGCAGGACGAGCTCGCGGAGGCAGGGCTCTCCGATGA
AGACATCTTCAAAGGAGTCGTCACCGAAAAGTGGAGAAAATTCATGAAGAGGCAGATCAA
GAGAGCGAGGATGTTTTTCACGGAGGCGGAGCAAGGGGTGACCGAGCTCAGGAAGGAGAG
CCGGTGGCCGGTTTGGGCATCTATGTTATTGTACCGGCAGATCCTCGATGAGATCGAGGC
GAACGACTACAACAACTTCACAAAGAGGGCCTATGTTGGGAAGGCGAAGAAGGTGCTAGC
GCTCCCTGTCGCGTACGGGAAATCGCTCCTCTTACCGTATTCACTGAGAAATAACCAGAC
CTAAAAGAAACAACAAAGCAAGATGAAGATGGTCAGGTTAGGGTAGATAGAAACAAACAG
AGCGGTGTCACGGCATCTGCCTTCGAGCTCTTCATCCAGTTAGTTGGACAAACAATGTCC
GTGAATCGGTACATTCATCGGCGATCAATGATGAATGCATGACATGAAGGGCTGGGGAAG
GAAGGGAGAAGAACAATGGAGGCAACCTCGATGGAGACCGAATGTTTGCAACTTTGCATG
TATATTATTATTGCTAGAACATGTGCGTTTGAAGACATAACAACATGTATATATATACCC
GAATTCGGGAAACAAGTATGTTATTATGTATGTAAGAGCGTATATATTCGACCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_18748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51290.2	421	2e-81	protein\|phytoene synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g29590.1	441	4e-85
Arabidopsis v10	AT5G17230.3	437	5e-70	\| Symbols: PSY \| PHYTOENE SYNTHASE \| chr5:5659839-5662087 REVERSE LENGTH=437