barSeed - Barley Seed Development Database

Probe CUST_15051_PI390587928

Source Contig U35_18749

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15051_PI390587928	Hv_44K_v2	AATTTGTATGCTTCAACTTATGGCCGAGGTTAAACAGCGTCGCTTTGTGCCGTTAAAAAA	1019	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.937	2.732	2.428	0.953	0.450	0.401
Raw	30.845	70.084	51.990	31.018	2.831	2.723

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11664	1090	3e-25	1020 - 1079	100	60 / 60	plus	ABC11664
Harvest35	U35_18749	1090	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1090 bp)

>U35_18749 1090 Hv_44K_v2
ACAAGTACCGTCTCATCCTCGCCAACCTGTCCCGCTACGACATCGTCGACTTCAACAAGG
ACGCCGGCGTCCGGTGCCACCCGCGCATCGTCGTCGGCCTCCGCAGCCACCGCGACCTCG
GCATCGACCCGGCCCGCACGCCGCGCAACTACACGCTGCTGGACTTCCGCATGTACATCC
GGGACATCTTCTCGCTGCCGCCCGACGGCCTTGGCATCCCGTACAAGCAAAAGCAGGAGG
CCAACAGGAACGCGACTGCCGGCACGGAGAAACGGAAGCCGCGGCTGATGCTCATCAACC
GTGGCCGGAACAGGAAGTTCGTCAACATTCCGGAGATCTCCGCGGCGGTGGAGGCAGCCG
GGTTCGAGGTGGTGGTCGTGGAGCCGCGGCGTGACCTGAGGCTGGAGGAGTTCTCCAAGG
CGGTGGACTCGTGCGACGTGCTCATGGGCGCGCACGGGGCCGGGCTCACCAACTTCTTCT
TCCTCCGCACCAACGCGACGATGCTGCAGGTGGTGCCGTGGGGCCACATGGAGCACTCGG
CCATGATATTCTACGGCGTGCAGGCCAAGGAGATGAGGCTGAGGGACGTCGAGTACAGCA
TCACCGCCGAGGAGAGCACGCTCTATGACAAGTACGGCAAAGACCACCCGGCGGTGAGCG
ACCCGGAGTCGATACATAAGCAGGGGTGGCAGCTGGGCATGAAGTACTACTGGCTGGAGC
AGGACATCAGGCTCAACGTCACCAGATTTGCTCCCACGCTGCACCGGGTGCTTCGGACGG
CCGAGGAATAGAGGATAGGAAATAATCCTATATACTCATAGGTTACAAGAAGAACAGCAC
ATATTTTTCTTCATTTTTAAGACCGTAACCTCTGCGTACTGGTAATATGTTGGTGTAATG
AGCTTGAAGCTTCTGGAACGAAGCACTCCGCAAAAGCAGTGCAGAAAATCAGGGAATGAT
ATAGCATGAGAATGAACTTTACTGAAGATTTTAAAACTGTTTAATTTTAAGAGAAACCCA
ATTTGTATGCTTCAACTTATGGCCGAGGTTAAACAGCGTCGCTTTGTGCCGTTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_18749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g28124.1	535	1e-130	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g09797.1	535	7e-137
Arabidopsis v10	None