barSeed - Barley Seed Development Database

Probe CUST_15042_PI390587928

Source Contig U35_18758

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15042_PI390587928	Hv_44K_v2	CTCGTTCTTGAAGAACCATTTCTGTGTGGACATAGGGTTCCTTTATCGTACTTATTACAA	655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3959.1	2618	2e-23	2554 - 2611	100	58 / 58	plus	ABC09596
JLOC1	JLOC1_2395.3	2586	1e-23	2402 - 2459	100	58 / 58	plus
JLOC1	JLOC1_2395.1	2738	1e-23	2554 - 2611	100	58 / 58	plus
Harvest21	ABC09596	728	3e-25	14 - 73	100	60 / 60	minus	ABC09596
Harvest35	U35_18758	728	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_18758 728 Hv_44K_v2
TATTAACATAAGGCCTAGAAATCTCTTAACAAAGGCTAAGGCGTTGAAACGTGCAGTTGC
AATGCAACGCCATGAGGCCCTCAGCCAGCATATAGACCAATTGGAAATCAATATGAAGCA
GATGAAGCGTGATTTGGGCATGGAGGACTACGATGAAGAGGGCGGGGATGGATCAGATTC
AGAAAGTGAAGACGATACAGCAGGCTATGATGAGGGTATGGAGGACTACGATAAAGAGGA
AGAGGATGAATCAGACTCGGAAGATGAAGACAACTAGGTGGAATCGCACGCTTTGCCACG
GCAGTGATTTTTTTTTAGATGTTCAGACAGTCTGTTTTGTCTGTTCACAGTATGGACTAG
ATGGTCCCCAACAATAGAGCAATATAGAGTTTATGGTGCGTGGTTTCATCTTCACATAGC
AGCCTCAGCAGTACACAAGAGGATCAACTTCAACCACTGGTCGTGCGGTCATGTCCTTCT
CTTGGTCGCTATGTCGAGAGGCCTGGTCTGAAGCCTGTGTATGTTTGGTGTGAAGCAACA
TCCAGAGCGAAAGTGCTCACATCAATAGGCTGCTGCAAGTCTGATAGATGGATCGCTTCC
CAGTTGGGACTCTCATGATTAGCCTTTGTAGGATCTGTACAAACACTTGGTATAGCTCGT
TCTTGAAGAACCATTTCTGTGTGGACATAGGGTTCCTTTATCGTACTTATTACAAAAAAA
AAAAAAAA

Homology of Contig U35_18758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None