barSeed - Barley Seed Development Database

Probe CUST_15041_PI390587928

Source Contig U35_18759

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15041_PI390587928	Hv_44K_v2	TTTCGGGGATGGTTCACGCCCATGTTGACCGATTTCGGCTGGCTTCAAAGGTGCTCCAAG	341	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.731	1.467	2.198	1.861	0.749	0.721
Raw	237.617	772.254	964.693	1304.000	181.479	189.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34008.1	2878	2e-24	1029 - 1088	100	60 / 60	plus	ABC09684 ABC09696
MLOC	AK361133	1873	3e-21	1502 - 1561	97	58 / 60	plus	ABC09684
JLOC1	JLOC1_21960.1	3149	8e-25	1029 - 1088	100	60 / 60	plus
Harvest21	ABC09683	449	3e-25	342 - 401	100	60 / 60	plus
Harvest21	ABC09684	1438	1e-23	969 - 1028	98	59 / 60	plus	ABC09684
Harvest35	U35_18759	451	3e-25	342 - 401	100	60 / 60	plus
Harvest35	U35_18760	1438	1e-23	969 - 1028	98	59 / 60	plus

Contig Sequence (451 bp)

>U35_18759 451 Hv_44K_v2
CACACCACACCACGCCACACTTGCTCCCCAGCCTCCCTCCACACCCATCACAACCCCACC
CCCACCCCCAATGGTGGCCACGCCCACGCGCTCCTCCCCCGAGCCCTAGATCCCTTCCTC
GCGCGCGCAGCCGCATGGCGGAGCACGCGGCCCGCCACCTCCGCCGCCGCGGCCCCGTCG
CCGGCTGGTGCTGCTCCTTCGCTGGGCAAGACGAGCTCATCAGGATGCACGAGCAGGCAT
CACCGATGTTCAGGTACGAGCTGAGCCGGATATCAGCGGGTGTGTTCATCGCGCTCGGGC
AAGGGAAAGTGCAGTGCCCCAGCGATCTGAGGAGTCAACTGTTTCGGGGATGGTTCACGC
CCATGTTGACCGATTTCGGCTGGCTTCAAAGGTGCTCCAAGGGGCTGGATGCGAGAGCGC
TGGAGGATAGCCTGAGGCAAGCCCTTCTCAC

Homology of Contig U35_18759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None