barSeed - Barley Seed Development Database

Probe CUST_15040_PI390587928

Source Contig U35_18760

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15040_PI390587928	Hv_44K_v2	GTATGCACTTCTTGACAGTCCGAGTCAGCAATAGAATTGTTGTAGCATTGCTTCAAAAAA	1367	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.941	1.512	2.022	1.556	0.655	0.619
Raw	872.966	2217.914	2550.047	3044.987	459.034	469.228

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34008.1	2878	7e-23	1428 - 1484	100	57 / 57	plus	ABC09684 ABC09696
JLOC1	JLOC1_21960.1	3149	4e-23	1428 - 1484	100	57 / 57	plus
Harvest21	ABC09684	1438	3e-25	1368 - 1427	100	60 / 60	plus	ABC09684
Harvest35	U35_18760	1438	3e-25	1368 - 1427	100	60 / 60	plus

Contig Sequence (1438 bp)

>U35_18760 1438 Hv_44K_v2
GGCACGAGGAGGAGGGCCCGGGGGACGGGCTGGATCTGAGGCTCTGCCTGCGCGGCAGGG
ACGGCGCCGGCTGCGTCGTCGTCATGGACCTCGACTCCTCCGTGCTCTGCGGGAGCAGCG
CCTTCTTCGCCGCCATGGCGCCCGAGCCCAACGCCGCCGGCGGGGCCAGGAGGATCGAGG
TCGACGGGGTCGACAACGTCGCCGCCTTCAGGGACGCCGTCGAGCTCATGTTCCAGGCCG
ACGCGCCGCCCTGGCTCGCCAGGGCCGGCGTCTCCCGGGCCATCGGCGTCCTCGAGGTGG
CTTCCTCGATTATGTTTGACAAAGGAATCAGATCATGTTTGGAGTACATTGAAGCAGTTC
CATGGACTGAGAATGAGGAAGAGAAATTAAAGCACCTCTTTGCTAGATGCACTTTCGACG
AAGCGTTATCAAAAGATGTATTGGCAAGATTGCAAACACAACCGTCTAGCAGCTCGGAAG
ACCTGACAGATCAGCTCATCCAGTCCGTCACCAGCAGCACAAACAACAGTGCAAGAAAAG
ACATGCAGTCTTTGATCAATGGTCTTCTAAGCAAAAGCTCAGTATATCAAAAGGATTTGT
CCGGATTAAACAAAAGGAGCCTTTACCAGATTTGTTGCTCCTGTCTGAACCTACTGGTGG
AACTTTTTAAGGAAGACTCGGAGCCAAAATGGCACACAGACCAGGCACTGAAAATTAGGC
ACAGTAAACCCATGATTGAAAGAGTCAGCAAGCAAAGTGAGAACCTCAGCTGGCTATTTG
AGATCCTGGTAAACAATGACATGGCGGAGAATTTCGTAGTGCTGTGGGCTGGGCAAGACG
AGCTCATCAGGATGCACGAGCAGGCATCCCCGATGTTCAGGTACGAGCTGAGCCGGATAT
CAGCGGGTGTGTTCATCGCGCTCGGGCAAGGGAAAGTGCAGTGCCCCAGCGATCTGAGGA
GTCAACTGTTTCGGGGATGGTTCACGCCGATGTTGACCGATTTCGGCTGGCTTCAAAGGT
GCTCCAAGGGGCTGGATGCGAGAGCGCTGGAGGATAGCCTGGGGCAAGCCCTTCTCACCC
TTCCGCTCCGGGAGCAGCAGAGCCTGTTCGAGGAATGGTTCCAGTGCTTCGCGTCTAGCG
GCGCGGAATGCCCGAACCTTAGCCGAGCCTTCCAGGTATGGTGGCGAAGGTCATTCGCTA
GATAGATCGTCGGTAGAGCCCCTGCAGCGGCATCCTATGAGATTATACCTGGTTCGCGTG
AGTTATATTGGTATTTGTAGTGTGTGTATGATTGTAAGATAAGAAGAATTCTTGTTAGCC
TGTAGAGTTGAGTTTTTCTTTATGATCTTGCCTCAGTTCTTCCCACTGTATGCACTTCTT
GACAGTCCGAGTCAGCAATAGAATTGTTGTAGCATTGCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g20920.1	528	0.0	protein\|H-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed
Brachypodium v1_2	Bradi1g02260.1	530	0.0
Arabidopsis v10	AT2G13690.1	544	3e-111	PRLI-interacting factor, putative \| chr2:5706704-5708895 REVERSE LENGTH=544