barSeed - Barley Seed Development Database

Probe CUST_1503_PI390587928

Source Contig U35_30260

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1503_PI390587928	Hv_44K_v2	ATCCTACTATCATAGACCTTTCTCAAGTTACCTTGCCCTCTTGAATTTGCACCTTTTCTG	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74010.1	920	2e-24	1 - 60	100	60 / 60	minus	ABC02371 ABC02373 ABC02375 ABC34560 ABC51541
JLOC1	JLOC1_49303.1	949	8e-25	668 - 727	100	60 / 60	plus
Harvest21	ABC34560	644	3e-25	109 - 168	100	60 / 60	minus	ABC34560
Harvest21	ABC30077	586	3e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC02373	287	3e-25	99 - 158	100	60 / 60	plus	ABC02373
Harvest21	ABC02372	781	3e-25	617 - 676	100	60 / 60	plus
Harvest21	ABC02371	747	3e-25	485 - 544	100	60 / 60	plus	ABC02371
Harvest35	U35_49499	502	3e-25	240 - 299	100	60 / 60	plus
Harvest35	U35_30260	586	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_15032	886	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_30260 586 Hv_44K_v2
CGCGCCTCCTCCTCGCTCAAGGTAGGAGCTTGTGAAAGTTCTCCAAGGCTGAGAAGATGG
TTCTGAAGACTGAGCTTTGCCGTTTTAGCGGCCAGAAGATTTACCCAGGGAAGGGTATCA
GGTTCATTCGTTCAGATTCACAGGTTTTCCTCTTTGCCAACTCAAAATGCAAGCGCTACT
TCCACAACCGCCTGAAGCCTGCAAAGCTTTGCTGGACAGCAATGTACAGGAAGCAGCACA
AGAAGGACATCCATGCTGAGGCTGCCAAGAAGAGGCGCCGCACCACCAAGAAGCCGTACT
CACGGTCGATTGTTGGTGCCACACTGGAAGTTATCCAGAAGAAGAGGGCTGAGAAGCCTG
AAGTCCGTGATGCTGCCAGAGAAGCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAGA
CCAAGGATGAGAAGAAGGCCAAAGCTTGGCGGTGGCGGCGGCAAGCGTTGAAAGTCGATT
ACATCATAGACATAGAGTTGTGCTGCCTAGCCTTGTTTCTTATCCTATCCTACTATCATA
GACCTTTCTCAAGTTACCTTGCCCTCTTGAATTTGCACCTTTTCTG

Homology of Contig U35_30260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59990.2	163	4e-64	protein\|ribosomal protein L24, putative, expressed
Brachypodium v1_2	Bradi3g38917.1	162	1e-65
Arabidopsis v10	AT2G36620.1	164	8e-62	\| Symbols: RPL24A \| ribosomal protein L24 \| chr2:15350548-15351819 REVERSE LENGTH=164