barSeed - Barley Seed Development Database

Probe CUST_15039_PI390587928

Source Contig U35_18761

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15039_PI390587928	Hv_44K_v2	TGAAACATGGCTGACATAAACTTGTCTTCGGGCACCAAAAACACACTCCCCCTTCTTTTG	933	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50909.1	571	2e-24	420 - 479	100	60 / 60	plus	ABC12150 ABC12151 ABC36731
MLOC	MLOC_50909.2	632	2e-24	417 - 476	100	60 / 60	plus	ABC12150 ABC12151 ABC20649 ABC24171 ABC36731
MLOC	MLOC_50910.1	1483	2e-24	765 - 824	100	60 / 60	plus	ABC12150 ABC12151 ABC20649 ABC24171 ABC36731
JLOC1	JLOC1_32476.1	1485	8e-25	764 - 823	100	60 / 60	plus
Harvest21	ABC36731	427	3e-25	233 - 292	100	60 / 60	minus	ABC36731
Harvest21	ABC12150	688	3e-25	210 - 269	100	60 / 60	minus	ABC12150
Harvest35	U35_18761	1225	3e-25	934 - 993	100	60 / 60	plus

Contig Sequence (1225 bp)

>U35_18761 1225 Hv_44K_v2
CCATCTCCATGCTCTTCCTGCCTCGGAGTCGGAGACCCTTTACAATAATTACTTACTTAC
TTGGAGCATCTCTAGCAGACCCTTTACAACCGGGCCTGGATCTGGATCCGGATCCATCTC
TTCTCCCCTCCCCCGCGCCGGATCGCGCATCGGCTTGGAGGCCCCTCGGGGCTGCCGCCG
GCGCGGGAGGCGTCCGCGGCCGTGCGAGCTGGGAATCGGGCGGCGGGTTTCGATCGAGGG
CTTTCTCGGGCTGGCGCGGGATCTGAGCCGCCGTCCATGGATTTCTCGCAGCTTGGGTTT
GGTACTATCCCCACCTCTCTCTCTCTCCCTCCCTCGGCGTTGACGCGCGCGCACCTAAAC
CGAATCAGGCGAGCGCTCGTTGCCGGATCGCTCAACCATCGTCCCTGGTCGGCTGGCGCC
AGGGATGAGCAGCTCCTGAGCCTGGTCGCTCGATGCGTGCACGCACGCATGTATGCATAT
AGTATATGTAATGTGTACTCCCTCCGTAAAGAAATATCATGGTCATGTTGCTTGGTGTGC
AATTGTGGCTGAAACAATCATGTCTTGGGCAATCAAGACAGCCGTGGTGGTGGGTACTAA
ATAAGAGCGTCTACGACCGGACTTGTTGACCCATCATTTGTGTGACCGCCCTCTCAGTTC
CCCGTCGCTACGGTGCCGCCAGCCATCGACATTCCATTGCCTGGGATCCGGTTGTGGCGT
GGGCTGGGAGCCGTACGGTGTTGTTGTCTGATGTGTGCTGGAGGGTTTGGTCGGTCGAGG
CCAGGTATGAGCAGCTCCTGAGACTGATGGATGGATGATGTATGCATGCATGATACTATG
GTCATGCTGGGACCGGATTCACTGTTTTGACCCTATTTGGAGAAGTTCAGCACAAAATGA
ACCATGTTGGAAGCTTATCTGGGGCGATGATGATGAAACATGGCTGACATAAACTTGTCT
TCGGGCACCAAAAACACACTCCCCCTTCTTTTGAAACCTTTTCATTCTCACAGAATATTG
ACGGCTCTGTCTTGGATGGTCATTCTGTTGAGTGATAACCAGAGGAGCTCGACTACAATT
TTGGGGGCTGATCTGGTGAAAGAAGATGGTGGAGCTAGGTTGTATGATCTATCAAAGGCG
AATCTGAGCCCTCCAACAAGATACACACCACATACACAAAAAAATAAAATCCAAAAACAA
AAANCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18761 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None