barSeed - Barley Seed Development Database

Probe CUST_15038_PI390587928

Source Contig U35_18763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15038_PI390587928	Hv_44K_v2	GATACAAACTATGGATACACTTGGTTTGTGAGTATTCTGTAGTTCATGCTTGTTGGTAAA	972	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.597	1.451	1.288	0.891	0.435	0.446
Raw	277.873	410.227	302.875	324.887	56.393	64.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67139.2	2843	7e-23	2787 - 2843	100	57 / 57	plus	ABC17121
JLOC1	JLOC1_44291.1	3114	3e-24	3039 - 3097	100	59 / 59	plus
Harvest21	ABC17121	1044	1e-24	973 - 1031	100	59 / 59	plus	ABC17121
Harvest35	U35_18763	1078	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1078 bp)

>U35_18763 1078 Hv_44K_v2
GAGAGTGCATTTTGAATCAATGCAGAAGGATTTTGGTATAACTCCTTCCGTCGATCACTA
TGCCAGCATTGTTAATATGCTTGGCCTGTCTGGCTATGTTGATGAAGCTCGTGAATTTAT
TGAACGGGTGCCTACGGAACCGAGCGTCGATATCTGGGAAAGTTTGATGAATATGTGCCG
ACTTAATGGATACTTGGAGCTGGGAGATCGTTGTGCTCAGATTATAGAACGCCTGGATCC
TTCTAGGCTGAATGAGCAGTCTAAAACGGGTCTTTTCCCTGTAAATGCTTCAGACCTTGC
AAAGGAGAAAGAGAGGAAGAAGGCTAATACTGCTGAAGCTAGGAGCAAAGTTCATGAATA
CAGAGCAGGGGATCGATCCCATCCAGAAACCCTTAAGATCTATGAAGAGCTGAGGTACTT
GGCGGCTCATATGAAGGAGGCTGGTTATATTGCGGATACTCGATTTGTGCTTCACGACGT
TGATCCAGAAACTAAAGAGGATGCCTTGCTAGCTCACAGTGAGAGGCTAGCCGTTAGTTA
TGGTCTTATAACCAGTGCTGCTCGTTCCCCAATTCGGGTTATCAAGAATCTTCGCTCCTG
TGGTGATTGCCACACAGCTTTGAAGATAATCTCTAAGCTTGTTGGCCGTCAGATCATTGC
GAGGGACGCAAAGAGGTTCCACCATTTTGAAAATGGTTTGTGCTCTTGCAAAGACTATTG
GTAAACAGAATGGGACGTGTCTACACTGTTATCAAATTTAATAGGTTGAGAACCAAAATC
GGTTGTGTAAATCCTGAAGGTATGTTGCCTATGAAACATTTGGTTTAACCACAGGTTTCA
TGTCAAGGACACGGTGTATCCTATCCTCTATGTAACATCCTATTAGTGTTCTAGTCTGGA
ATTTGTTAGCTTGAAGCATTCTTTGTCTGATGATGCTCCCTCACAATTCGTTACATGTCA
TAAAAAACTAATGATACAAACTATGGATACACTTGGTTTGTGAGTATTCTGTAGTTCATG
CTTGTTGGTAAAAAAAAAAAAAAAAAAGTACTTGTATGACTTTTGTACTCCTTGATTT

Homology of Contig U35_18763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53610.1	797	4e-147	protein\|selenium-binding protein, related, putative, expressed
Brachypodium v1_2	Bradi2g49207.1	910	1e-148
Arabidopsis v10	AT2G25580.1	615	4e-90	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:10888102-10889949 FORWARD LENGTH=615