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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15035_PI390587928Hv_44K_v2AAAGTCGACACTTTAACAAAGGCGATGGAGTCAGAGGCTAAGAAGATGAGACGGGATGTA1631GeneList: darkturquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3660.6121.3722.2551.1161.314
Raw 90.342242.469473.2991242.941215.297271.312



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_62327.219952e-24507 - 56610060 / 60minus ABC20205 ABC20531
MLOCMLOC_62327.323232e-24459 - 51810060 / 60minus ABC20205 ABC20531
MLOCMLOC_62327.123112e-24524 - 58310060 / 60minus ABC20205 ABC20531
JLOC1JLOC1_40786.224968e-251734 - 179310060 / 60plus
JLOC1JLOC1_40786.124718e-251709 - 176810060 / 60plus
Harvest21ABC202056063e-25176 - 23510060 / 60plusABC20205
Harvest35U35_1876620623e-251632 - 169110060 / 60plus



Contig Sequence (2062 bp)

>U35_18766 2062 Hv_44K_v2
CCTGACCGCCATTAACACACTCTCTCCGACCGCCCCCCACAAGCACAGCGCAGGCGCAGG
CGCATTGGCCGGCGTGCTTGCGATCGGGATTGCCGGCGGCGGGGGCCATGGCCGATCCGT
ACGGCGACGGCCGGGCGCTGAGGAACCATCAGCAGGCGCCGGCACAGCAGCGGCCGAGGC
TGAAGCCGGCGCTGGAGATGGAGGACCTCATCAGCCTGCTCCACGGCTCCGATCCCGTCC
GCGTCGAGCTCACCCGCCTCGAGAACGACCTCCACTATAAGGAGAAGGAGCTGGGCGACG
CGCAGGCGGAGATCAAGGCCCTGCGCCTCTCCGAGCGGGCCCGCGAGAAGGCCGTCGAGG
ATCTTACCGAAGAACTGGCAAAGGTGGATGGGAAGCTCAAGCTCACCGAGTCTCTCCTGG
AAAGCAAAAACCTTGAAGCGAAGAAGATCAACGACGAGAAGAAAGCAGCGCTTGCCGCCC
AGTTTGCAGCGGAGGCTACGCTGCGAAGGGTTCATGCCGCGCAGAAGGACGATGACATGC
CTCCCATCGAGGCCATCCTCGCGCCGCTGGAGGCCGAGCTGAAACTAGCCCGTCAAGAGA
TTGCAAAATTACAAGATGACAACAGGGCATTAGACCGTCTTACAAAGTCTAAGGAAGCAG
CTCTGCTGGAAGCAGAAAGGACCGTTCAGATAGCACTAGCAAAAGCTTCCTTGGTGGATG
ATCTGCAAAATAAAAACCAAGAATTGATGAAACAGATCGAGATATGTCAGGAAGAGAACA
AAATCTTGGACAGAATGCACCGCCAGAAGGTTGCTGAGGTTGAAAAGCTTACTCAGACCG
TCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGCGGTGCAGCCGCAAATGCTGTGAGGGACT
ATCAGCGGAAAGTTCAGGAGATGAATGAGGAAATGAAAACTCTGGATCGTGAGCTTGCTC
GTGCAAAGGTTTCAGCAAATAGGGTCGCGGTAGTGGTGGCAAATGAGTGGAAAGATGGCA
ATGATAAAGTAATGCCTGTTAAGCAATGGCTTGAAGAACGGAGGCTTCTGCAAGGAGAAA
TGCAGCAACTCCGTGATAAACTTGCTATAGCAGAAAGGGCTGCAAGATCAGAAGCTCAAC
TGAAGGACAAGTTCCAGCTACGGCTTAAAGTGCTTGAGGAAGGATTGAGAATGTCGACAT
CTCGAACCAATGCAAGTGCCGCCCGCCGCCAGTCTATTGGTGGCGCTGAGAGTGCATCCA
AGACCAATGGCTTTCTATCGAAGCGGCCATCATTCCAGATGAGAACATCGGTATCTACCA
CCACGACTACGCTTGTGAACCATGCGAAGGGGGCATCCAAGTCTTTTGATGGAGGGTGTA
GATCACTTGACCGTTATAAGGGCCATGTAAATGGGGTTGGCATGAACGTATCAACCGACT
CCAGCGAGGATAAGGAGTCAAACAACTCAGATGAGAAGCCTAGTGAATTTACATCTGTTG
AGTCGGAGGACACGGTGTCAGGTATGCTGTATGATATGCTGCAAATGGAGGTTGTTGCTC
TAAGGAAGGCTTGTCATGAAAAGGACCAAAGCTTGAAAGACAAGGACGACGCAGTCGAGA
TGTTGGCCAAGAAAGTCGACACTTTAACAAAGGCGATGGAGTCAGAGGCTAAGAAGATGA
GACGGGATGTAGCTGCCATGGAGAAGGAGGTGGTGGCTATGCGATTAGAGAAAGAGCCTG
AGCCTGAGCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGCGGAAATCAATCAATCAG
CGACTCGGGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGCGGTGTTTTTATTCATTT
CCTGTCGTGGAACCGAAAACACTTTGTTGTATAGGTATGGTGTGGCCTTGCAATATTTTT
TGTTTGTAATCCTACCTACTCCCCAAGAGCTTGTGTGGTGTTTTATGCTAGCCAAGTTGT
TTGTGAATAATAACATGATGATGATGATGATGATAGTGCAGTTAAGCTGGTGTGTTTTTT
TTTGGAAAAAAAAAAAAAAAAA



Homology of Contig U35_18766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g44340.15680.0protein|ATMAP70 protein, putative, expressed
Brachypodium v1_2Bradi4g00250.15770.0
Arabidopsis v10AT1G68060.16220.0| Symbols: ATMAP70-1, MAP70-1 | microtubule-associated proteins 70-1 | chr1:25511392-25514226 REVERSE LENGTH=622