barSeed - Barley Seed Development Database

Probe CUST_15033_PI390587928

Source Contig U35_18768

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15033_PI390587928	Hv_44K_v2	GCAACTTAAACTAGCCTGAGGTTCAGTTACTTTCTATTGCAAAATGCAAGCATGCGTTGG	732	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.648	1.789	1.131	0.750	0.461	0.491
Raw	670.338	1089.454	612.044	644.070	135.249	160.488

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73685.1	1366	2e-24	1272 - 1331	100	60 / 60	plus	ABC11012
JLOC1	JLOC1_49060.2	975	8e-25	862 - 921	100	60 / 60	plus
JLOC1	JLOC1_49060.1	1467	8e-25	1354 - 1413	100	60 / 60	plus
Harvest21	ABC11012	795	3e-25	733 - 792	100	60 / 60	plus	ABC11012
Harvest35	U35_18768	795	3e-25	733 - 792	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_18768 795 Hv_44K_v2
GACAGGTCAGACAGAGCTTCCCTTCTTCCCGCTAGCTCGGGACCGGGGCGGATCCATCCA
CCGGGCGGACCATCTCTGATCTCTCGCGGGCGCCATGGCGGAGCACGCCGCCCCGGAGCT
ACCCAAGAGGTGCCACCACTGCGCAGGGCCTCTCTCCAAGGACATGGAAACTAGCAGCTG
GACCGTGACTCCATTGGTTCGAGATAGCTTCTCAATGATTGGTTCCGCTGTTGGGGGTAC
TGCAGGCGCGTTTTATGCATTTAATCATGCTATGCCTGTTGTTCGGCGTTACATAAAAGG
GCCAATGTGGATACATTTTCTTGTTGGTGCCCCTCCAGTTGTTGTATTCTCTTCTGCGTG
TGCTGGATTAGCAGCTGGTACAATACCAGCCGTTGCGCAACTGGTTTCGTCGTCCTGTCA
TGCTGCCATGTCATCGCCCTCCTTTGCCCGCCCTGCTTCTCACGACGATATGCACAAGAG
CAGAGGCTCCTCGCCATTGTAATTTACTGGTGCAACAGACCAACCACAGAATTGTAGTGA
TCTAAGAAATCTGTGCCACCTTATAACAGGGGATGCTTTTGTAAATGTTAAGATGTTCAT
GCAGAATGATGATGACTGACATGCGCTCCTTTCACTTCTATTTTTTTTGGTATGTATCTC
TATGTATAGGTCATGCCCTCGGTCTTGTGTTATTTTTTTTTTGTATTAAAATAAGTATTG
CGGTGTTGTGAAGCAACTTAAACTAGCCTGAGGTTCAGTTACTTTCTATTGCAAAATGCA
AGCATGCGTTGGTCT

Homology of Contig U35_18768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15979.1	139	1e-66	protein\|gb protein, putative, expressed
Brachypodium v1_2	Bradi2g09737.1	136	5e-79
Arabidopsis v10	None