- Probe CUST_1502_PI390587928
- Source Contig U35_30261
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1502_PI390587928 | Hv_44K_v2 | TCTTGCTAGATGATGTTCCTCGTTAAGTTTTAGATAAGTTGTACGAATGTTGATGGATGC | 494 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249822.1 | 707 | 7e-23 | 530 - 589 | 98 | 59 / 60 | plus | ABC08233 ABC29276 ABC40874 |
| JLOC1 | JLOC1_20363.1 | 207 | 4e-23 | 122 - 181 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC38379 | 498 | 3e-25 | 142 - 201 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC08233 | 625 | 3e-25 | 423 - 482 | 100 | 60 / 60 | plus | ABC08233 |
| Harvest21 | ABC08232 | 554 | 3e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08231 | 736 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29276 | 568 | 1e-24 | 377 - 435 | 100 | 59 / 59 | plus | ABC29276 |
| Harvest21 | ABC40874 | 594 | 1e-23 | 135 - 194 | 98 | 59 / 60 | minus | ABC40874 |
| Harvest21 | ABC34099 | 483 | 1e-23 | 278 - 337 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC08235 | 693 | 1e-23 | 510 - 569 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_42613 | 498 | 3e-25 | 142 - 201 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_30261 | 554 | 3e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16012 | 736 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16011 | 654 | 3e-25 | 452 - 511 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29803 | 568 | 1e-24 | 377 - 435 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_43794 | 594 | 1e-23 | 135 - 194 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_16016 | 715 | 1e-23 | 510 - 569 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_16014 | 1827 | 6e-22 | 1643 - 1702 | 97 | 58 / 60 | plus |
Contig Sequence (554 bp)
>U35_30261 554 Hv_44K_v2 TGCCGCCTGCCGCCCGCCGCCCCTCGATCGATCTACACCCGGAGCGTCGCCGCATACCCT CCCCTTTTATCCACCGTCCCGGAATGCCGCTCCACACCAGATCCGTGCGACCCTCCATCC CGGCACGCCGCCCCTCGGCAACACTCCCTTGCAACCCTGCTTCTGTGGTGCGCCGTTCCT CGTCACTCCTCCCCTACGGCCAACTGCGTCTACTACCTCTAGACGGGGTCCCGCGGCTAT GGGGAGAGTTGCTGCTACAACCACCCTCACGATCAAGCTGTCGTGGTATGTGGCATGCAA GCAGAGCAAAGGATGAACTTAACAATTACCAAATCTACATCATTTGATCTGATAAGATTC AAAAGATAAATGAATGATTATATGGGTGCATGGAAACTATACAACAATGATGAAGACGAT GTTCCTGTTCATGATGATGATGATGATGATGATGATGGAGGCTTTCAGTTTTAATTAAGT TGTAGGGATGGACTTCTTGCTAGATGATGTTCCTCGTTAAGTTTTAGATAAGTTGTACGA ATGTTGATGGATGC
Homology of Contig U35_30261 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |