barSeed - Barley Seed Development Database

Probe CUST_15022_PI390587928

Source Contig U35_18779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15022_PI390587928	Hv_44K_v2	TCATGCAAGGGAGTATGAGGTATGTACTGAGACTATTATGAATTTGTGAATTTGACCGGG	968	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.621	2.026	1.332	0.763	0.364	0.373
Raw	351.414	677.501	386.475	343.250	57.498	64.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357129	2410	2e-24	2341 - 2400	100	60 / 60	plus	ABC12141 ABC12142
JLOC1	JLOC1_14386.1	1328	8e-25	1247 - 1306	100	60 / 60	plus
Harvest21	ABC12142	721	3e-25	662 - 721	100	60 / 60	plus	ABC12142
Harvest35	U35_18779	1028	3e-25	969 - 1028	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_18779 1028 Hv_44K_v2
AAACTGTACAGAATGTTCTACAAAAATTCAACTTTTTCAAGACCCCTGTTGATTTATCAG
AGGCTGCTCATGTTCGGAAGGAGTATGATGATGCCAGCTCAAAGCTGTCCAAAATTCAGT
CTAGGATAACCTCTCTGACAGATAAGCTAAAGCAAGACTTTGGTAAGGAAAAGGAGTTCT
ATTACTTCTATGACCAGTGCTTTGAGGGCAAGGAGGGCAAGTATGTTTACAAGGTCTGTC
CATACAAGAAAGCTTCACAGGTTGAAGGACACAGTTCCACCAACCTGGGGCGCTGGGACA
AATTTGAAGAATCATACAGGATGATGCACTTTGCAAATGGAGACAAATGCTGGAATGGCC
CTGACCGAAGCCTAAAGGTGAGGCTTAGATGTGGGCTAAGCAACGAGCTTAATGGTGTCG
ATGAGCCCAGCAGATGCGAGTATGTCGCTGTACTGTCAACTCCTGCAATGTGCATTGAAG
AGAAGCTGAAGGAGCTGCAACAGAAACTCGACGCTGCGTCTTCAGAACTGTCTGGCCATG
ACGAGCTCTAAACTGTCACGAGGAAACATTGACTCCACTATTACAACCATATAACCATAA
GAAAGGCTACAGAGATGCATGCTGGATAGAAAAGCCTGGTGTTGTGAGTAGCCGCCAAAG
CAGCTTTAGTTTGGCTAGGGAATTTTTTGAGCAAAGTGGTCAGATGGTTGAAATTTTCAC
ATCGTCCTGATTTGCTAGTAGCTGCAACTGGATATCTTTTACTTTAGCTTCCTTTGAAGA
CGTTTCTTCAAATTGTTTATGTAGGTCATCTGAAAGAGACTAAGCCTTCTGTTTGTAACT
TATCAGTTATGCACTGTGTTCTGAATTATACTAGTAGTGATACTATATTTACTTTCTCTG
GATGGAACTTGTGTCTCATATGCTGCTGGCCCAATTCTTTTCTGTATCGAAACTAGTACG
TACTCCTATCATGCAAGGGAGTATGAGGTATGTACTGAGACTATTATGAATTTGTGAATT
TGACCGGG

Homology of Contig U35_18779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16970.3	583	5e-106	protein\|glucosidase II beta subunit-like domain containing protein, expressed
Brachypodium v1_2	Bradi2g10540.2	607	2e-119
Arabidopsis v10	AT5G56360.1	647	8e-80	\| Symbols: PSL4 \| calmodulin-binding protein \| chr5:22823586-22827950 REVERSE LENGTH=647