barSeed - Barley Seed Development Database

Probe CUST_15019_PI390587928

Source Contig U35_18782

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15019_PI390587928	Hv_44K_v2	AAGTAAAACCCATGCTATTTTAGGCTAGGCTGCCAACGCCGAGATCCTCCACCACCTCAC	5	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4380.4	2240	2e-24	693 - 752	100	60 / 60	plus	ABC08402
MLOC	MLOC_4380.1	3389	2e-24	3102 - 3161	100	60 / 60	minus	ABC08402
MLOC	MLOC_4380.2	3390	2e-24	3103 - 3162	100	60 / 60	minus	ABC08402
MLOC	MLOC_4380.3	3751	2e-24	3102 - 3161	100	60 / 60	minus	ABC08402
JLOC1	JLOC1_2714.1	3428	8e-25	159 - 218	100	60 / 60	plus
Harvest35	U35_18782	589	3e-25	6 - 65	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_18782 589 Hv_44K_v2
AAAAAAAGTAAAACCCATGCTATTTTAGGCTAGGCTGCCAACGCCGAGATCCTCCACCAC
CTCACCACCCACCTCCTCTACCAGCTTTGCCGTTCGGGGTCCGCGTCCGCCGCGTGGGTG
GCCTCGCCTCCCCCACCGGAATCCCCGCCGCGTCGCGGGGGCCGTCGCGGTTGCACCACA
GGGGGGCCTCCCGGCACCGGCACCGGCACCGATTTTAAGATGGCCGCCGCGGCAGCAGCT
GCCGCGTCCGCGTCGCCGTCGATGGCGTCGTCGGGCGGGGACGAGTCGCCGTCGCCGCCC
AAGCCGGTGCTCCTGCACGGGGACCTCGACCTCTGGGTCCTCGAGGCGCGGCTGCTGCCC
AACATGGACATGTTCTCCGAGCACATCCGCCGCTGCTTCGCCTCCTGCGGCACCGCCTCC
TCCTGCGCGCCCAGGCAGCCCCCGCCCTCCAGCCGCGGGGTTGGGGAGGCCGGCAGCCGC
CGCCACCACCACCGCAGGATCATCACCAGCGACCCCTACGTCACGCTCTCCGTCGCCGGC
GCCGTCGTCGCGCGCACCGCCGTCATCCCAACAGCCAGGAGCCCACCTG

Homology of Contig U35_18782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None