barSeed - Barley Seed Development Database

Probe CUST_15015_PI390587928

Source Contig U35_18786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15015_PI390587928	Hv_44K_v2	CATGCCGATCAGGATCAGCTCTAATGCTTTCCTTGATATATTCAGAGATGCTAAAGACAC	610	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.978	1.044	1.257	1.364	0.764	0.736
Raw	69.242	101.256	122.753	197.316	42.235	43.229

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52825.1	1519	2e-24	786 - 845	100	60 / 60	minus	ABC10994 ABC49767
JLOC1	JLOC1_33870.2	1589	8e-25	674 - 733	100	60 / 60	plus
JLOC1	JLOC1_33870.1	1523	8e-25	654 - 713	100	60 / 60	plus
Harvest21	ABC10994	1308	3e-25	611 - 670	100	60 / 60	plus	ABC10994
Harvest35	U35_18786	1308	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (1308 bp)

>U35_18786 1308 Hv_44K_v2
GGCCGCCCCTGAGTAGCTCCCGTAGCTCGCCGCCCCTGAGTAGCCATGAGTTGCGCGGCG
GTGTGTGCTCCCCCCTCCGGTCTCAGCCGCCACCACGGATTCTCCTCCTCCCCCTCGAGC
AGGCGACGGGGGAGAGCTTCCTACACTATCCGGGCCTGTGCCAACTCCGGCGACGCGGAT
GACAGCGGCGGAGGGCTCCTACCTCGGATGGTGCTCCACGACTCCCTCGACGCCGCGGGG
GTCGTCACTGACCACGCTAGGGCGGCGAGGGAGGGGTTTGCGACGCAGATCGGGAGGCTC
ACGAGGCTCAACGCGGAGACCAGCATCGCCATCAGCCGCGGCGCCGATCTCGCTCGGGCC
GCGCTCTGTATCGCGGCCGAGGACGACTCGCTCGTCTCCCACTCTTCCGTGCCGCTCCCC
GTAGACGCCTTCATTGCTCGCCTTGACGATCTTTCCACCGGGTTCCTCGCCGCGGGGTTC
CTCCCGCCCTCCGGAGCGCCGCCCGAGGTCTTCTTGGACCACCTCGACCGCTACCTCTAC
GTCCACAAGGGTTTTCGAAGAACAAACGTAGCATCAGATGCTCGGGCCATGTATCTTCAC
TCGACTTTGACATGCCGATCAGGATCAGCTCTAATGCTTTCCTTGATATATTCAGAGATG
CTAAAGACACTACGGCTGTATGGCTTACTAGACTTCGATGAGGAGATCTCCTTTCCACAT
GATCTCAATGGCCTCCCTAGGGGCTATGACAAACGAAAAAGCAAGTTTTGTGATGAACCA
AATATTTTGACAGCAAAGTCACTTTTGGTTGAGATTTTACAAACTCTGAAGGGTATGTTT
TGGCCGTTCCAGTCTAACCGGTCAAGTAGCTTATTTTTGAATGCTGTTGCTGCAAACCAC
CATGGCCCTGGTAATGTAGGCGGCAGTCAAGCAAGGTCACATGGCAATATAAGTGCCATA
GAGATGGCTGCTGCTAAATCTGCTCAACATAGGTTGATGCGTGGAGTATGGACTAATGTG
CGCTTCGGTGACATGCGTCGTGCTTTGGCAGGTTGGACAGCCCCGGACCAATCCACTAGA
GATGTTGGAGGACGACGCAGTGAACACTCTTATGGCACGAGTAAACCTAATTTTAGCAGA
GGACGGCTGGGACAACCACAGACCTGCTGCAAGTTACTGGACCAAAAACTCTGAGCCATG
GTAGATCATACACTCATTTGACCGATCAGTGTATATATTCCACTAACTGAGACATGGATG
TGCAACAAATTGTACATATAATTGTACCCTGGACGTTTGCAAACAATT

Homology of Contig U35_18786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16620.5	219	1e-50	protein\|expressed protein
Brachypodium v1_2	Bradi2g10240.1	428	7e-163
Arabidopsis v10	None